Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq19 98.7 1e-15
>seq19
Length=3929835
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
||| || ||||| | || | ||| |||| ||| | || | ||||||||||| ||| ||
Sbjct 2578423 TCCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCC 2578364
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| |||| ||| || || || |||||| || ||| | || |||||||| || ||
Sbjct 2578363 ATTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGA 2578304
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| ||||| || || ||| || | |||||| || || || ||||| ||
Sbjct 2578303 AACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAAT 2578244
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398
|| || || |||||||| ||||| || ||| || |||||
Sbjct 2578243 TCCTTCAATGCTATCATCTTTCATGCAAATTAGGAAGCAGCT 2578202
Score = 86.0 bits (94), Expect = 8e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
||| || ||||| ||||| || |||||||| || || ||||| | ||||| ||||
Sbjct 2578091 AGTGCCAGCATTGAATAATGTGGGAGAAGCATGAGTGAACCAGCGCTGAGACATCAGATG 2578032
Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535
|||||| | | | || | ||||| | ||| || ||||| || | || | ||| |
Sbjct 2578031 ATACGTCCTGAGAACAGAGACAATATCGTCCTTG-TGGATTCCAACTGAAACCCTCATCA 2577973
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595
||| ||||| || ||||||| | |||| | ||||| | ||||| | ||||
Sbjct 2577972 GCATGTGCTGTGGCCTTTCAATCACCTTGCCTGAAACTTTCATGAGATAGGACCTCTCCA 2577913
Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
|||||||| ||||| || | || ||| ||||| |||||||||||
Sbjct 2577912 GGGTTTTAAAGCCAAAGTAATCATAGTCAAAATCTCGATCGTAAATAAT 2577864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139032215200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |