Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 136 6e-27 seq12 93.3 6e-14 >seq7 Length=7914316 Score = 136 bits (150), Expect = 6e-27 Identities = 388/584 (66%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| |||||||| ||||| |||| ||||| | Sbjct 1959496 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCT 1959437 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| || || ||| | ||||| | |||||| | || | Sbjct 1959436 GGACGGCGGAGGAGGTGGACCTCTCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCG 1959377 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 ||||| | || || | ||| | | |||||||| || | |||||| || |||| Sbjct 1959376 CCGACGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCG 1959317 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTG 125233 | ||| || ||| || ||| | ||| | ||| || | |||| || | Sbjct 1959316 TGCTCGAGAACCTGGCSGGCCGCTTCATGAAGGAGGT--CCAGGTCGCCGAGGCC-CGCG 1959260 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | ||||| || |||||| || Sbjct 1959259 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCC 1959200 Query 125293 TTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACAC 125350 | || | ||||| || |||| | | || | || |||| ||| | ||||| Sbjct 1959199 TGGAGACCTACATCAAGGACTCCG--AGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACAC 1959142 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 || || | | ||||| | |||| | || |||||||| | | |||| Sbjct 1959141 CGTCCCCTGCGTGGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACTCCTCCGAGTC 1959082 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | |||||| | || || || |||||| ||| |||||||||||||| || || || Sbjct 1959081 CTT---CGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAG 1959025 Query 125471 TTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| ||||||| ||||||||||||||||| ||||||||||| || || | | Sbjct 1959024 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCA 1958966 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 1958965 ACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 1958922 >seq12 Length=5901629 Score = 93.3 bits (102), Expect = 6e-14 Identities = 176/256 (69%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| ||||||||||| ||| || ||||| || |||||||| | |||| || || Sbjct 1840835 CCGTGGGTCAGGTGGCCACCGGAAGGGAGATCCAGCCCCATGATACGGTCGTGGGGGTTG 1840894 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||||| | || || || ||| || ||||| || || || ||| Sbjct 1840895 AGGAGGGCGGTGTAGGCAGCGAAATTCGCCGGGCTACCGGAGTAGGGCTGGACGTTGACT 1840954 Query 127567 CCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| |||| || || | |||||| |||| ||| | | | || || Sbjct 1840955 CCCCAGGCAGCGGAATC---CAGGTGGAACGCCTTGAG--GGCGCGGTCGCGGCAGAGGT 1841009 Query 127624 --TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCG 127681 ||||| | ||||| |||||||||||||||||||| || || || ||| | ||||| | Sbjct 1841010 TCTCGATCTGGTCGATGAACTCGTTACCACCATAGTAACGATTCCCAGGCATGCCCTCGG 1841069 Query 127682 AGTACTTGTTGATGAG 127697 ||||||||||| |||| Sbjct 1841070 AGTACTTGTTGGTGAG 1841085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059014735200