Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 >seq4 Length=8682450 Score = 102 bits (112), Expect = 7e-17 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| || || || || ||||| || | || |||||||| | | ||||| || Sbjct 1474512 CCAGTGGATCCAAACCCTCCGGCGCCCCTGACGGTGGAGTCCAGGCTCTCGACCTCGACC 1474453 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 || || || | | |||| |||| |||||| | || ||||| ||||| ||| Sbjct 1474452 ACCTCTGGCGTCATGATTCTCTCGATAATCAACTGCGCGACCCGATCGCCGGTCTTCACC 1474393 Query 5624 TCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681 || ||| | | |||| ||||||||| | ||||| | | |||||||||||| Sbjct 1474392 TCAAAAGCAACAT--CCGAGTGGTTGAACAGGATGACGCCGATGGGGCCGCGGTAGTCCA 1474335 Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG 5741 |||||| |||||| || || ||||| ||| ||||||| |||||| || || | ||||| Sbjct 1474334 CGTCTACCACGCCTGCTCCGACGTCAATGGAGTGCTTCCACGCCAGTCCCGACCTGGGAG 1474275 Query 5742 CCAC 5745 | || Sbjct 1474274 CTAC 1474271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054295174240