Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq4 102 7e-17
>seq4
Length=8682450
Score = 102 bits (112), Expect = 7e-17
Identities = 170/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563
|| ||||| || || || || ||||| || | || |||||||| | | ||||| ||
Sbjct 1474512 CCAGTGGATCCAAACCCTCCGGCGCCCCTGACGGTGGAGTCCAGGCTCTCGACCTCGACC 1474453
Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623
|| || || | | |||| |||| |||||| | || ||||| ||||| |||
Sbjct 1474452 ACCTCTGGCGTCATGATTCTCTCGATAATCAACTGCGCGACCCGATCGCCGGTCTTCACC 1474393
Query 5624 TCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681
|| ||| | | |||| ||||||||| | ||||| | | ||||||||||||
Sbjct 1474392 TCAAAAGCAACAT--CCGAGTGGTTGAACAGGATGACGCCGATGGGGCCGCGGTAGTCCA 1474335
Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG 5741
|||||| |||||| || || ||||| ||| ||||||| |||||| || || | |||||
Sbjct 1474334 CGTCTACCACGCCTGCTCCGACGTCAATGGAGTGCTTCCACGCCAGTCCCGACCTGGGAG 1474275
Query 5742 CCAC 5745
| ||
Sbjct 1474274 CTAC 1474271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430054295174240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |