Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq16 82.4 6e-11 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 |||||||||||||||| ||| || | || | | |||||| ||| || | | |||| Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530 Query 48630 TGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGT 48687 ||||| || ||| ||||| | | || |||||||||| |||||| ||| | || Sbjct 8500531 TGTCCTGGATCTTCGCCTTGACGTTGTCG--ATGGTATCGGAGGACTCCACCTCAAGGGT 8500588 Query 48688 TATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||||||||| ||||| || ||||||||| Sbjct 8500589 GATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCATC 8500628 >seq16 Length=4450370 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||| || || || | || |||||||||||||| Sbjct 3338506 TGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 3338447 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 3338446 TTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTA 3338387 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | |||||| ||| | || ||||| || |||| Sbjct 3338386 GCCTTCACGTTGTCG--ATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGG 3338329 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||| || || || ||||||||| Sbjct 3338328 TAAGAGTCTTGACGAAGATCTGCATC 3338303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251097320020