Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq17 149 1e-31 seq14 136 6e-28 seq10 122 1e-23 seq7 118 2e-22 seq13 114 2e-21 seq8 107 3e-19 seq9 98.7 2e-16 seq3 98.7 2e-16 seq2 89.7 8e-14 >seq17 Length=4297296 Score = 149 bits (164), Expect = 1e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || ||||||||||| || |||||||| |||||||| || ||||| | Sbjct 615449 GAGATAACATCCAGGGGATCACCAAGCCGGCGATCCGTCGCCTGGCTCGGCGCGGTGGGG 615390 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || || |||| || |||| | | || | |||||||||||| Sbjct 615389 TAAAGCGCATCAGCGGTCTGATCTACGAGGAGACGAGGGGCGTCCTCAAGATCTTCCTCG 615330 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| |||||||||||| || ||||| |||||| Sbjct 615329 AGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTCACCG 615270 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| ||||||| || | || || || ||||| Sbjct 615269 CCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 615233 >seq14 Length=5602277 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | ||| ||||||||||||||||| ||||||||||| ||||| Sbjct 2465160 CGCGAAGCGGCACCGGAAGGTTCTCCGAGATAACATCCAAGGTATCACCAAGCCTGCTAT 2465219 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| | | || ||||| ||||| || || | |||| || |||| Sbjct 2465220 CCGTCGGCTGGCGAGGAGGGGCGGAGTTAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 2465279 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| ||| ||| || || || || Sbjct 2465280 CAGGGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGTGACGCTGTCACGTACACGGA 2465339 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||| |||||| |||||||| |||||||||| | || | || || Sbjct 2465340 GCACGCCCGCAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCGCTCAAGAGGCAGGG 2465399 Query 16672 CCG 16674 ||| Sbjct 2465400 CCG 2465402 >seq10 Length=6603776 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || ||||||||||||||||| ||||| ||||| || || Sbjct 6270251 GCGAAGCGCCACCGCAAGGTGCTCCGAGATAACATCCAAGGGATCACGAAGCCCGCCATT 6270310 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || ||||| || || ||||| || || | |||| || |||| Sbjct 6270311 CGCCGCCTGGCCCGCCGTGGGGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGACG 6270370 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||||||||||| ||| ||| |||| ||||| || ||| || ||| Sbjct 6270371 AGGGGCGTCCTCAAGATCTTCCTGGAGAACGTCATCCGCGATGCGGTCACCTACACGGAG 6270430 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 6270431 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGGC 6270490 Query 16673 CG 16674 || Sbjct 6270491 CG 6270492 >seq7 Length=7914316 Score = 118 bits (130), Expect = 2e-22 Identities = 187/268 (70%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | ||| | || |||||||| || ||||| ||||| || || Sbjct 7332493 CGCCAAGCGCCATCGCAAAGTGCTTAGGGACAACATCCAGGGCATCACAAAGCCGGCGAT 7332552 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || ||||| ||||| || || || |||| || |||| Sbjct 7332553 CCGGAGGCTGGCGAGGAGGGGAGGAGTTAAGCGCATCAGCGGGCTGATCTACGAGGAGAC 7332612 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | |||||||||||| ||| ||| || | || ||| || ||| || || Sbjct 7332613 GAGGGGCGTCCTCAAGATCTTCCTCGAGAACGTCATTCGCGACGCTGTCACCTACACGGA 7332672 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| |||| || || | ||| | || || Sbjct 7332673 GCACGCCCGCCGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTCAAAAGGCAGGG 7332732 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || || || || ||||| Sbjct 7332733 CCGGACGCTCTACGGATTCGGTGGTTAA 7332760 >seq13 Length=5795864 Score = 114 bits (126), Expect = 2e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| || ||||| | || || || || Sbjct 5037582 GACAACATCCAGGGCATCACCAAGCCGGCGATCCGCCGCCTGGCCAGGCGCGGCGGCGTG 5037523 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || |||| || |||| | | || ||||||||||||| || Sbjct 5037522 AAGCGCATCAGCGGGCTGATCTACGAGGAGACGAGGGGCGTGCTGAAGATCTTCCTGGAG 5037463 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| || |||||||| | || ||||| ||||| || Sbjct 5037462 AACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCGAGGCGCAAGACCGTCACGGCC 5037403 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| ||||||| || | || || || ||||| | | | || || || || Sbjct 5037402 ATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACGCTCTACGGCTTCGG 5037350 Score = 105 bits (116), Expect = 1e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| || ||||| | || || || || Sbjct 5034644 GACAACATCCAGGGTATCACCAAGCCCGCGATCCGCCGCCTGGCCAGGCGCGGCGGCGTG 5034703 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| || |||| | | || ||||||||||||| || Sbjct 5034704 AAGCGCATCAGCGGGCAGATCTACGAGGAGACGAGGGGCGTGCTGAAGATCTTCCTGGAG 5034763 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| || || ||||| | || ||||| ||||| || Sbjct 5034764 AACGTCATCCGAGACGCCGTCACCTACACGGAACACGCGAGGCGCAAGACCGTCACGGCC 5034823 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| ||||||| || | || || || ||||| | | | || || || || Sbjct 5034824 ATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACGCTCTACGGCTTCGG 5034876 >seq8 Length=7641483 Score = 107 bits (118), Expect = 3e-19 Identities = 182/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || | || |||||||| || ||||| ||||| || || Sbjct 1671236 GCGAAGCGCCACCGCAAGGTC-CTGAGGGACAACATCCAGGGCATCACGAAGCCGGCGAT 1671294 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | | || || || ||||| || || | |||| || |||| Sbjct 1671295 CCGGCGGCTGGCGAGGAGGGGCGGCGTAAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1671354 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| ||| |||| || || | ||| || || Sbjct 1671355 CCGCGGAGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTGACCTACACGGA 1671414 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| |||||||| ||||||| || | || || || || Sbjct 1671415 GCACGCCCGCCGGAAGACCGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGGCAGGG 1671474 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || ||||| Sbjct 1671475 CCGGACGCTCTACGGATTTGG 1671495 >seq9 Length=6991192 Score = 98.7 bits (108), Expect = 2e-16 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 6528506 GCGAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCCAT 6528448 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| || || | |||| || || | Sbjct 6528447 CCGCCGCCTGGCCCGCCGCGGCGGAGTGAAGCGCATCAGCGGCCTCATCTACGAGGAAAC 6528388 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 6528387 CAGGGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCGGTCACCTACACGGA 6528328 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || ||||||| | || || || | || || || || Sbjct 6528327 GCACGCTCGGCGGAAGACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGCCAGGG 6528268 Query 16672 CCG 16674 ||| Sbjct 6528267 CCG 6528265 >seq3 Length=8976907 Score = 98.7 bits (108), Expect = 2e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || || ||||||||||| || ||||| || || ||||| | || Sbjct 3342588 CTCCGTGATAACATACAGGGGATCACCAAGCCGGCCATCCGCCGGCTTGCTCGCAGAGGC 3342529 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || | |||| || || | || | || ||||||| ||| Sbjct 3342528 GGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAAACGCGCGGCGTCCTGAAGATATTC 3342469 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||| ||| || ||| || |||||||| || ||||| ||| Sbjct 3342468 CTGGAGAATGTAATCCGTGACGCTGTCACCTACACTGAGCACGCGCGGCGGAAGACGGTC 3342409 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| | || | || ||| | | | || |||||||| Sbjct 3342408 ACGGCTATGGATGTGGTGTATGCTCTCAAGAGGCAGGGCAGGACCCTGTACGGTTTTGG 3342350 >seq2 Length=11374105 Score = 89.7 bits (98), Expect = 8e-14 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 9700734 GCGAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCGATC 9700793 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || |||||||| || || | |||| || |||| Sbjct 9700794 CGGAGGCTGGCGAGGAGAGGAGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACG 9700853 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 9700854 AGGGGCGTCCTCAAGATCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 9700913 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || | ||||| | ||||| || |||| | || ||| Sbjct 9700914 CACGCTCGCCGGAAGACCGTGACGGCGATGGACGTGGTCTACGCGCTGAAGAGGCAGGGC 9700973 Query 16673 CG 16674 || Sbjct 9700974 CG 9700975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075181713860