Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 1e-34
seq3 141 1e-28
seq6 116 5e-21
seq11 98.7 1e-15
>seq2
Length=11374105
Score = 161 bits (178), Expect = 1e-34
Identities = 137/169 (81%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 135701 TACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTC 135760
||||||||||| ||||||||||| || ||| |||||||||| ||||||||| |||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 135761 GCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAA 135820
|| || ||||| ||||| || |||||||||||||||||| || ||||||| |||| |||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 135821 GGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACT 135869
|| ||| |||||||||||| || || |||||||| ||||| ||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq3
Length=8976907
Score = 141 bits (156), Expect = 1e-28
Identities = 158/211 (75%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 135617 GAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTC--- 135673
||||| || | | ||||| ||||| |||| ||||| |||||||| | ||| | ||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 135674 TTC--CACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACC 135731
||| |||||| | | ||||| | ||||||| ||| ||||||||||| || ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852
Query 135732 GACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTG 135791
| |||||||||| ||||||||| ||| || || ||||| ||||| || ||||||||||
Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912
Query 135792 CTGTTTTCCTGGTCTACCCCTTTGGACAAGG 135822
||||||| || |||||| |||| |||||
Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq6
Length=8045491
Score = 116 bits (128), Expect = 5e-21
Identities = 122/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 135787 TACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCT 135846
||||||||||||| || ||||||| |||| ||||| ||| ||||||| || | ||
Sbjct 2591561 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCT 2591620
Query 135847 TGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCAT 135906
|| |||||||| || || |||| ||| |||| ||| || |||||| |||| || ||
Sbjct 2591621 AGGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTAT 2591677
Query 135907 GCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGT 135946
||| || ||||||||||| || || ||||| || ||| ||
Sbjct 2591678 GCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq11
Length=5849386
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 135727 TTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGC 135786
|| ||| |||||||| || ||||||||| ||| || || ||||| | ||| | | |||
Sbjct 4649182 TTTCCGTCTGGGTATTCGTCCTTGGATTGCTGTTGCATATTCAGCTCATGTAGTAGTTGC 4649123
Query 135787 TACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCT 135846
|||||| ||||| || ||||||| ||| ||||| ||| |||||||||||| ||
Sbjct 4649122 AACTGCTTTTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCT 4649063
Query 135847 TGGCATTTCTGGAACTTTT 135865
|| |||||||| |||||
Sbjct 4649062 AGGAATTTCTGGTGCTTTT 4649044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627967843008000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |