Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq3 141 1e-28 seq6 116 5e-21 seq11 98.7 1e-15 >seq2 Length=11374105 Score = 161 bits (178), Expect = 1e-34 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 135701 TACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTC 135760 ||||||||||| ||||||||||| || ||| |||||||||| ||||||||| ||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 135761 GCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAA 135820 || || ||||| ||||| || |||||||||||||||||| || ||||||| |||| ||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 135821 GGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACT 135869 || ||| |||||||||||| || || |||||||| ||||| |||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 135617 GAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTC--- 135673 ||||| || | | ||||| ||||| |||| ||||| |||||||| | ||| | || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 135674 TTC--CACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACC 135731 ||| |||||| | | ||||| | ||||||| ||| ||||||||||| || || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 135732 GACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTG 135791 | |||||||||| ||||||||| ||| || || ||||| ||||| || |||||||||| Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 135792 CTGTTTTCCTGGTCTACCCCTTTGGACAAGG 135822 ||||||| || |||||| |||| ||||| Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq6 Length=8045491 Score = 116 bits (128), Expect = 5e-21 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 135787 TACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCT 135846 ||||||||||||| || ||||||| |||| ||||| ||| ||||||| || | || Sbjct 2591561 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCT 2591620 Query 135847 TGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCAT 135906 || |||||||| || || |||| ||| |||| ||| || |||||| |||| || || Sbjct 2591621 AGGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTAT 2591677 Query 135907 GCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGT 135946 ||| || ||||||||||| || || ||||| || ||| || Sbjct 2591678 GCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq11 Length=5849386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 135727 TTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGC 135786 || ||| |||||||| || ||||||||| ||| || || ||||| | ||| | | ||| Sbjct 4649182 TTTCCGTCTGGGTATTCGTCCTTGGATTGCTGTTGCATATTCAGCTCATGTAGTAGTTGC 4649123 Query 135787 TACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCT 135846 |||||| ||||| || ||||||| ||| ||||| ||| |||||||||||| || Sbjct 4649122 AACTGCTTTTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCT 4649063 Query 135847 TGGCATTTCTGGAACTTTT 135865 || |||||||| ||||| Sbjct 4649062 AGGAATTTCTGGTGCTTTT 4649044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967843008000