Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq6 118 3e-22 seq2 109 2e-19 >seq6 Length=8045491 Score = 118 bits (130), Expect = 3e-22 Identities = 123/158 (78%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 19706 TGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTG 19764 |||||| ||||| | | ||||| |||| ||||| |||||| ||||||| || |||| | Sbjct 2591564 TGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 19765 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGC 19824 | || |||||||| || ||||| || | |||||| | ||||||||| ||||||||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679 Query 19825 ATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGT 19862 | || ||||||||| | || || ||||| |||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq2 Length=11374105 Score = 109 bits (120), Expect = 2e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 ||||||||||| || | | || || ||| | || ||||| || |||||| |||| | Sbjct 4329620 AGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 4329679 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGT 19748 | || |||| ||| |||||| ||||| | | ||||| |||| ||||| |||||| | Sbjct 4329680 CTGTAGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCT 4329738 Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACT 19785 |||||||||||||| || || ||||||||||| |||| Sbjct 4329739 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441565695120