Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2 116 6e-21 seq8 95.1 2e-14 seq6 95.1 2e-14 seq19 93.3 7e-14 seq3 89.7 8e-13 seq7 84.2 4e-11 >seq2 Length=11374105 Score = 116 bits (128), Expect = 6e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | |||||||||| | |||||| ||||||||||||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| |||||| |||| ||| ||||| ||| | | ||||| | ||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACT 212065 || || || || ||||||||| |||| || || || || ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 212365 TGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAAC 212424 ||| | ||||| | || | ||||| | || ||||| ||||||||||| | ||| | Sbjct 525064 TGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCAT 525123 Query 212425 TTCAACCAATCAGTTGTTGATGCATCAG-GTAAGGTTGTTCCTACTTGGGGTGATGTTCT 212483 || |||||||| | ||||| ||| | || ||| || || |||| |||| | | Sbjct 525124 TTTAACCAATCCATAGTTGACA-ATCCGAGTCGTGTTATTAATATTTGGACTGATATCAT 525182 Query 212484 TAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACT 212543 ||| || || |||||||||||||| ||||| ||| | ||||| |||||||||| || Sbjct 525183 CAACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCT 525242 Query 212544 TGACTTAGC 212552 |||||||| Sbjct 525243 AGACTTAGC 525251 >seq6 Length=8045491 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 ||||| ||| | | ||||| | ||||| || || || || ||| || || |||| Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || |||||||||||||| | |||||| | |||||| |||||||||||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 |||||||| ||| ||| || || ||| | ||| || Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq19 Length=3929835 Score = 93.3 bits (102), Expect = 7e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| || | ||| | || ||||||||||||||||||||||| ||| | ||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || ||||||||| | || |||||||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGC 3082548 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 8e-13 Identities = 132/187 (71%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 211813 GAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTG---GTAATC 211869 ||||| ||| | ||||| ||||| | |||||||| ||||||||| || | || | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 211870 TTC--CACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 ||| |||||| | | || | | ||||||| | ||||||||||| | || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | ||||||| ||||||||| |||||| |||||||| ||||| |||| ||| | Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 211988 CTGTATT 211994 |||| || Sbjct 715913 CTGTTTT 715919 >seq7 Length=7914316 Score = 84.2 bits (92), Expect = 4e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 211783 GCAATCGGTTTACACTTCT-ATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTA 211841 || || ||||| || || | |||| |||||||||||||||||| ||||||||||| || Sbjct 495565 GCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTTGATGAGTGGTAATA 495506 Query 211842 CAATGGTGGTCCTTAC 211857 |||||||||||||||| Sbjct 495505 CAATGGTGGTCCTTAC 495490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807554998111200