Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7 120 3e-22 seq8 118 1e-21 seq16 113 4e-20 seq2 107 2e-18 seq3 105 6e-18 seq19 87.8 2e-12 >seq7 Length=7914316 Score = 120 bits (132), Expect = 3e-22 Identities = 307/461 (67%), Gaps = 11/461 (2%) Strand=Plus/Minus Query 46139 CCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTG 46198 ||| | | ||||||||||| | || ||||| || || |||||| |||| || || | Sbjct 1959088 CCGAGTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCG 1959029 Query 46199 GCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTA 46258 |||| || ||||||||| | |||| | ||| ||||||||||||| || || Sbjct 1959028 GCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCT 1958969 Query 46259 GCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATA 46318 ||||||||| || || |||||||||||||| || ||||| || || ||| || Sbjct 1958968 CCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCT--- 1958912 Query 46319 ACACTCGCGTGCACGACAAGCTTGCGCCCGAC-ACCG--TGCTGAGCATGTTCAAGGAGG 46375 || | | | | | | |||||| |||||| |||| | | ||| || || | Sbjct 1958911 ACTCCCTCCTCCGCTCCAAGCT---CCCCGACGACCGCCTCCGCGCCATCGTCGCCGACG 1958855 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | || | || ||| ||| || | | ||| || ||| || || | ||||||| Sbjct 1958854 CCGTCGAGATCGAGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGA 1958795 Query 46436 A-CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTT 46494 | | | || ||| | | ||||||||||| || || ||||| || ||| | || Sbjct 1958794 ATCAGGCCCTC-ATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTC 1958736 Query 46495 CACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 ||| || ||| | ||||| ||| || || || | ||| | ||||||||| Sbjct 1958735 GGCCACCCCAAGATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTC 1958676 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||||| || || || ||||| ||||||||||||||||| Sbjct 1958675 CAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 1958635 Score = 107 bits (118), Expect = 2e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | || | ||||||||||| || || ||||| ||| Sbjct 4181329 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 4181270 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | |||||| |||||||| || ||| |||| | |||||||||||||| ||| Sbjct 4181269 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 4181210 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || | ||| ||| || ||| | | || | ||| || | ||||| | Sbjct 4181209 ATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACC 4181150 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | || || || || || || || ||||| ||||||||| || Sbjct 4181149 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 4181099 >seq8 Length=7641483 Score = 118 bits (130), Expect = 1e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 || ||||| | || ||||| | || | |||||||||||| || |||||||| | |||| Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 6351953 -AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 6352011 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||| | Sbjct 6352012 TATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCAC 6352071 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| |||||||| Sbjct 6352072 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq16 Length=4450370 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || ||||| || ||| | |||||| |||||| |||||||| || Sbjct 3338500 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCG 3338441 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||||||||||||| ||||| || || ||||| ||| || ||| Sbjct 3338440 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 3338381 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | |||||| | || | || | ||| || ||||| ||||| Sbjct 3338380 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTC 3338321 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 3338320 TTGACGAAGATCTGCAT 3338304 >seq2 Length=11374105 Score = 107 bits (118), Expect = 2e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | || | ||||||||||| || || ||||| ||| Sbjct 483639 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 483698 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | |||||| |||||||| || ||| |||| | |||||||||||||| ||| Sbjct 483699 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 483758 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || | ||| ||| || ||| | | || | ||| || | ||||| | Sbjct 483759 ATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACC 483818 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | || || || || || || || ||||| ||||||||| || Sbjct 483819 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 483869 >seq3 Length=8976907 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||||||||| ||| |||| | | |||||||||||| ||||| || || || Sbjct 8500472 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTT 8500531 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| ||| ||||| | || | ||||||| |||||| | || | ||| | Sbjct 8500532 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGAT 8500591 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| || ||||| |||||||| Sbjct 8500592 AGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 >seq19 Length=3929835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTC 145683 ||||||||| || | ||| || || || |||||||| | | | |||||| | |||||| Sbjct 2579343 GGCGATCGAGGCGAGATTGCACACGGCAGTCTCCTCAGGGCTGGTGTATTCGATGATCTC 2579284 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||||| ||| | | ||||| || || ||||||| ||| || |||||||||||||| Sbjct 2579283 TGTGCACAGATTTGAAGACTTGATCGTCCCAAGATTTTTCTGGTTGCTTTTCCTGTTGCA 2579224 Query 145744 CGCGTCCT 145751 | |||| Sbjct 2579223 GGAATCCT 2579216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012681996800