Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq7 120 3e-22
seq8 118 1e-21
seq16 113 4e-20
seq2 107 2e-18
seq3 105 6e-18
seq19 87.8 2e-12
>seq7
Length=7914316
Score = 120 bits (132), Expect = 3e-22
Identities = 307/461 (67%), Gaps = 11/461 (2%)
Strand=Plus/Minus
Query 46139 CCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTG 46198
||| | | ||||||||||| | || ||||| || || |||||| |||| || || |
Sbjct 1959088 CCGAGTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCG 1959029
Query 46199 GCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTA 46258
|||| || ||||||||| | |||| | ||| ||||||||||||| || ||
Sbjct 1959028 GCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCT 1958969
Query 46259 GCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATA 46318
||||||||| || || |||||||||||||| || ||||| || || ||| ||
Sbjct 1958968 CCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCT--- 1958912
Query 46319 ACACTCGCGTGCACGACAAGCTTGCGCCCGAC-ACCG--TGCTGAGCATGTTCAAGGAGG 46375
|| | | | | | | |||||| |||||| |||| | | ||| || || |
Sbjct 1958911 ACTCCCTCCTCCGCTCCAAGCT---CCCCGACGACCGCCTCCGCGCCATCGTCGCCGACG 1958855
Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435
| || | || ||| ||| || | | ||| || ||| || || | |||||||
Sbjct 1958854 CCGTCGAGATCGAGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGA 1958795
Query 46436 A-CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTT 46494
| | | || ||| | | ||||||||||| || || ||||| || ||| | ||
Sbjct 1958794 ATCAGGCCCTC-ATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTC 1958736
Query 46495 CACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554
||| || ||| | ||||| ||| || || || | ||| | |||||||||
Sbjct 1958735 GGCCACCCCAAGATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTC 1958676
Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||||| || || || ||||| |||||||||||||||||
Sbjct 1958675 CAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 1958635
Score = 107 bits (118), Expect = 2e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || ||||| | || | ||||||||||| || || ||||| |||
Sbjct 4181329 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 4181270
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | | |||||| |||||||| || ||| |||| | |||||||||||||| |||
Sbjct 4181269 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 4181210
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || | ||| ||| || ||| | | || | ||| || | ||||| |
Sbjct 4181209 ATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACC 4181150
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238
|||| || | || || || || || || || ||||| ||||||||| ||
Sbjct 4181149 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 4181099
>seq8
Length=7641483
Score = 118 bits (130), Expect = 1e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066
|| ||||| | || ||||| | || | |||||||||||| || |||||||| | ||||
Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||| || |||||| |||||||| || ||| |||| | |||||||||||||| ||
Sbjct 6351953 -AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 6352011
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| ||| || ||||| | || | || || | ||||| |
Sbjct 6352012 TATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCAC 6352071
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | || || || || || || || ||||| ||||||||
Sbjct 6352072 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq16
Length=4450370
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| |||||||| || ||||| || ||| | |||||| |||||| |||||||| ||
Sbjct 3338500 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCG 3338441
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| |||| | ||||||||||||||| ||||| || || ||||| ||| || |||
Sbjct 3338440 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 3338381
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | || | || || | |||||| | || | || | ||| || ||||| |||||
Sbjct 3338380 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTC 3338321
Query 131218 TTTACGAAAATCTGCAT 131234
|| ||||| ||||||||
Sbjct 3338320 TTGACGAAGATCTGCAT 3338304
>seq2
Length=11374105
Score = 107 bits (118), Expect = 2e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || ||||| | || | ||||||||||| || || ||||| |||
Sbjct 483639 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 483698
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | | |||||| |||||||| || ||| |||| | |||||||||||||| |||
Sbjct 483699 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 483758
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || | ||| ||| || ||| | | || | ||| || | ||||| |
Sbjct 483759 ATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACC 483818
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238
|||| || | || || || || || || || ||||| ||||||||| ||
Sbjct 483819 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 483869
>seq3
Length=8976907
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
|||||| ||||||||||| ||| |||| | | |||||||||||| ||||| || || ||
Sbjct 8500472 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTT 8500531
Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
||| ||| ||| ||||| | || | ||||||| |||||| | || | ||| |
Sbjct 8500532 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGAT 8500591
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || ||||| ||||| || ||||| ||||||||
Sbjct 8500592 AGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627
>seq19
Length=3929835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTC 145683
||||||||| || | ||| || || || |||||||| | | | |||||| | ||||||
Sbjct 2579343 GGCGATCGAGGCGAGATTGCACACGGCAGTCTCCTCAGGGCTGGTGTATTCGATGATCTC 2579284
Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743
| ||||| ||| | | ||||| || || ||||||| ||| || ||||||||||||||
Sbjct 2579283 TGTGCACAGATTTGAAGACTTGATCGTCCCAAGATTTTTCTGGTTGCTTTTCCTGTTGCA 2579224
Query 145744 CGCGTCCT 145751
| ||||
Sbjct 2579223 GGAATCCT 2579216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012681996800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |