Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq19 104 2e-17
seq2 96.9 2e-15
>seq19
Length=3929835
Score = 104 bits (114), Expect = 2e-17
Identities = 160/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || |||||||||||||| ||||| || || ||||| ||||||| ||| |||
Sbjct 2800369 GATGCCTTCTACCGCTACAAGATGCCCCGGATGGTGACCAAGATCGAGGGCCGGGGGAAC 2800310
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || ||| | | ||||||||| || |||| ||||| || | ||||| |||
Sbjct 2800309 GGCATCAAGACCAACGTGGTCAACATGGTGGACATCGCCAAGGCCCTGGCCCGCCCCGCC 2800250
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
||||| | || || || ||||| ||||| || || || ||| | ||||||| | ||
Sbjct 2800249 GCCTACACCACCAAGTACTTCGGCTGCGAGCTCGGGGCCCAGTCAAAGTTTGACGAGAAG 2800190
Query 6375 AACGAGCG-CTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTG 6419
| || ||| || | | || ||||| | || || | || ||||||
Sbjct 2800189 ACCG-GCGTCTCCCTGGTCAACGGGGCCCACGACACGGCGAAGCTG 2800145
>seq2
Length=11374105
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 11346164 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 11346223
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 11346224 GCCCGTATTTAGCCTT 11346239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947118356620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |