Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 seq2 96.9 2e-15 >seq19 Length=3929835 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || |||||||||||||| ||||| || || ||||| ||||||| ||| ||| Sbjct 2800369 GATGCCTTCTACCGCTACAAGATGCCCCGGATGGTGACCAAGATCGAGGGCCGGGGGAAC 2800310 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || ||| | | ||||||||| || |||| ||||| || | ||||| ||| Sbjct 2800309 GGCATCAAGACCAACGTGGTCAACATGGTGGACATCGCCAAGGCCCTGGCCCGCCCCGCC 2800250 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 ||||| | || || || ||||| ||||| || || || ||| | ||||||| | || Sbjct 2800249 GCCTACACCACCAAGTACTTCGGCTGCGAGCTCGGGGCCCAGTCAAAGTTTGACGAGAAG 2800190 Query 6375 AACGAGCG-CTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTG 6419 | || ||| || | | || ||||| | || || | || |||||| Sbjct 2800189 ACCG-GCGTCTCCCTGGTCAACGGGGCCCACGACACGGCGAAGCTG 2800145 >seq2 Length=11374105 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 11346164 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 11346223 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 11346224 GCCCGTATTTAGCCTT 11346239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947118356620