Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 >seq19 Length=3929835 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| |||| ||| | || | ||||||||||| ||| || Sbjct 2578423 TCCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCC 2578364 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| |||||||| || || || |||||| || ||| | || ||||||||| || || Sbjct 2578363 ATTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGA 2578304 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | |||||| || || || ||||| || Sbjct 2578303 AACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAAT 2578244 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || || || |||||||| ||||| || ||| || ||||| Sbjct 2578243 TCCTTCAATGCTATCATCTTTCATGCAAATTAGGAAGCAGCT 2578202 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| ||||| || |||||||| ||||| ||||| | ||| | |||| Sbjct 2578091 AGTGCCAGCATTGAATAATGTGGGAGAAGCATGAGTGAACCAGCGCTGAGACATCAGATG 2578032 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 |||||| | | | ||| | ||||| | ||| || ||||| |||| || | ||| | Sbjct 2578031 ATACGTCCTGAGAACAGAGACAATATCGTCCTTG-TGGATTCCAACTGAAACCCTCATCA 2577973 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||||||||| || ||||||| | |||| | ||||| | ||||| | |||| Sbjct 2577972 GCATGTGCTGTGGCCTTTCAATCACCTTGCCTGAAACTTTCATGAGATAGGACCTCTCCA 2577913 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||| ||||| || | || ||| ||||| ||||||||||| Sbjct 2577912 GGGTTTTAAAGCCAAAGTAATCATAGTCAAAATCTCGATCGTAAATAAT 2577864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631841592000