Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq2 100 2e-16 >seq7 Length=7914316 Score = 100 bits (110), Expect = 2e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| |||| || ||||| ||| Sbjct 4181103 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 4181162 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| || ||| ||| | || ||||| || || ||||| Sbjct 4181163 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 4181222 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || ||||| || || | || || | | ||| | | ||| |||||| Sbjct 4181223 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 4181282 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || | ||||| Sbjct 4181283 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCT 4181314 >seq2 Length=11374105 Score = 100 bits (110), Expect = 2e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| |||| || ||||| ||| Sbjct 483865 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 483806 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| || ||| ||| | || ||||| || || ||||| Sbjct 483805 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 483746 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || ||||| || || | || || | | ||| | | ||| |||||| Sbjct 483745 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 483686 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || | ||||| Sbjct 483685 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCT 483654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327894376300