Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq8 150 2e-31 seq2 113 5e-20 seq19 93.3 5e-14 >seq8 Length=7641483 Score = 150 bits (166), Expect = 2e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 166850 GTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 166909 |||| ||||||| |||| | ||| |||| || ||||| |||||||| |||| |||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 166910 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCA 166969 | ||||| ||||| | || || | ||||||| | || | |||| | ||| || ||| Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 166970 ACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGG 167029 ||| |||| ||| ||||||||||| ||||| || ||||||||| ||||||||||||| | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 167030 ATCTTGCTGCTGCTGA 167045 | | ||||| | ||| Sbjct 525245 ACTTAGCTGCAGTTGA 525260 >seq2 Length=11374105 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 ||||||||||||||| |||||| | || ||| | |||||||||||||||||| || Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 ||||| || || ||||| ||||| || | || || ||| || |||| ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACT 166549 ||| ||| ||||| | ||||| || || || ||| || ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq19 Length=3929835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 166940 GTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGC 166999 |||| | ||||||||||| ||| | ||||||||||| || ||||||||||| |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 167000 ACGAGCGTAATGCTCACAACTTCCCTCTGGA 167030 | || |||||||||||||||||| |||| || Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGA 3082542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231858192000