Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16 100 2e-16 seq3 89.7 4e-13 >seq16 Length=4450370 Score = 100 bits (110), Expect = 2e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || ||| | ||||| || || |||| | || ||||| || Sbjct 3338302 AGATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCT 3338361 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | || || || || ||||||||||| || || || || | Sbjct 3338362 CGGACACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 3338421 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || ||||| || ||| | ||||| ||||||| || |||| || | Sbjct 3338422 AGCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATA 3338481 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || || || ||||| Sbjct 3338482 ACATCCAGAAGGAGTCCAC 3338500 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || ||| | ||||| || || |||| ||||| ||||| || Sbjct 8500629 AGATGCAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCT 8500570 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||||||| | ||| | |||| || || || ||||||||||| || || || || | Sbjct 8500569 CCGATACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 8500510 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 | || | || || || |||||||| ||| | ||||| Sbjct 8500509 AGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGA 8500473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727897691300