Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 134 3e-26 seq2 93.3 9e-14 seq1 93.3 9e-14 seq5 91.5 3e-13 >seq7 Length=7914316 Score = 134 bits (148), Expect = 3e-26 Identities = 555/863 (64%), Gaps = 42/863 (5%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| |||||||| ||||||||||||| | | Sbjct 1958653 TCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 1958712 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| |||||| ||||| || || | || || |||||| || || ||||| | Sbjct 1958713 GCGTGGTAGATCTTGGGGTGGCCGAGGGCGAGGAGGAGGCGGTCGGCGACGAACTCGATG 1958772 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||| || | |||||||| | | || || | || || |||| | Sbjct 1958773 TACTGGGCCATGAGGGCCTGATTCATGCCGACGAGCGCGCAGGGGAGGGCGTCGCAGACG 1958832 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC-CTTCACCTGT-GCCAGAGACA 251800 || ||| ||| | | || || || | || || || | | || | | | | | Sbjct 1958833 AAGTCCCGCTCGATCTCGACGGCGTCGGCGACGATGGCGCGGAGGCGGTCGTCGGGG--A 1958890 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||||| || ||||| ||||| | | || | ||| || |||||||||| Sbjct 1958891 GCTTGGAGCGGAGGAGGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGC 1958950 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | ||||| ||||| | || || ||| ||||||||| Sbjct 1958951 GGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGA 1959010 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 |||| ||||| ||| || ||||| | | |||||||| || | | || || |||| Sbjct 1959011 AGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGACGAGGC 1959070 Query 251981 GCTCAGCAAACGACTTG----------TCCTGCGACAAGAACTTCTGTGCCCATGCTGCC 252030 |||| || || |||| | ||| ||| || | ||||| | ||| Sbjct 1959071 GCTCGGCGAAGGACTCGGAGGAGTCGATCCAGCG----GA------GGGCCCAGTCGGCC 1959120 Query 252031 TT-CTTTCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 || | ||| ||| ||||| || || | || ||||| | | | || ||| | Sbjct 1959121 TTGCGGGCCA--CGCAGGGGACGGTGTCCACGGCGCGGAAGAG-GCGGGC--CTTGGCCT 1959175 Query 252089 C---GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGT 252145 | ||||| |||| | || || ||||| ||||||||| || |||||| ||| Sbjct 1959176 CGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGA 1959235 Query 252146 TGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGT 252205 || |||||| | | ||||| || || | | | ||| ||| | ||| Sbjct 1959236 TGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATGAAGC 1959295 Query 252206 TGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCT 252265 | || | |||||| | ||| ||||| ||| | | || |||||| | || | | Sbjct 1959296 GGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCCGCGAAGAAGGCGAGGACGTGGG 1959355 Query 252266 TGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGT--CGGCAATGTCCTGATT 252323 |||||||||| ||||| ||| || |||| | | ||||| ||| | ||| || Sbjct 1959356 TGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTGCTCCCAGTGCCGG--AGGTCGTG--G 1959411 Query 252324 CAGAGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAAC 252381 ||||| || || ||| |||||||||| | | | |||||||||||||||| | | Sbjct 1959412 GAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTCCGCCTTCTTGTACATCTCCCAG 1959471 Query 252382 ACATCAGGGTACTTGATTGGGAA 252404 | | |||||| |||| ||||| Sbjct 1959472 ATCTGCGGGTACCTGATCGGGAA 1959494 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7458125 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7458184 Query 142563 CCCCAC 142568 |||||| Sbjct 7458185 CCCCAC 7458190 >seq2 Length=11374105 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 10374210 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10374151 Query 142563 CCCCAC 142568 |||||| Sbjct 10374150 CCCCAC 10374145 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 7094435 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7094376 Query 142564 CCCAC 142568 ||||| Sbjct 7094375 CCCAC 7094371 >seq1 Length=14772968 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 9231307 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9231366 Query 142563 CCCCAC 142568 |||||| Sbjct 9231367 CCCCAC 9231372 >seq5 Length=8147712 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 7825807 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7825866 Query 142564 CCCAC 142568 ||||| Sbjct 7825867 CCCAC 7825871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836536616820