Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 286 6e-72 seq8 179 7e-40 seq16 178 2e-39 seq2 163 5e-35 seq5 104 4e-17 seq1 104 4e-17 seq14 93.3 8e-14 seq12 89.7 9e-13 seq9 84.2 4e-11 >seq7 Length=7914316 Score = 286 bits (316), Expect = 6e-72 Identities = 607/899 (68%), Gaps = 26/899 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||| |||||||||||||| || || |||||||||||||| |||||||| Sbjct 1958616 CATGACGGAGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTG 1958675 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 |||||| ||||||||||| |||| |||||||| ||||| | |||||||| || Sbjct 1958676 GAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTGGCC 1958735 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | |||||| || |||||||||||||||||| ||| ||| || || Sbjct 1958736 GAGGGCGAGGAGGAGGCGGTCGGCGACGAACTCGATGTACTGGGCCATGAGGGCCTGATT 1958795 Query 10115 CATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||| | | ||| |||||||| ||||||||| | ||||||| ||| | |||| | Sbjct 1958796 CATGCCGA-CGAGCGCGCAGGGGAGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGACGG 1958854 Query 10174 CTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233 | || |||||||| | ||| || |||||| ||| || || | Sbjct 1958855 CGTCGGCGACGATGGCGCGGAGGCGGTCGTCGGGGAGCTTGGAGCGGAGGAGGGAGTAGA 1958914 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 |||| | || | ||||||||||||||||||| ||||| ||||||||| || Sbjct 1958915 GGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGG 1958974 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 || ||||||||||| || || || |||||||| ||||||||||| ||||||| Sbjct 1958975 TGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGA 1959034 Query 10354 ACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCG 10411 |||||| ||||| ||||| | |||||||||||||||| |||||||| ||| Sbjct 1959035 --AGAAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGA---CTCG-- 1959087 Query 10412 CGAAAAGTATTTCGA------GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 || ||| || | |||||| | ||||| ||||| |||| || || Sbjct 1959088 -GAGGAGTCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCCACGCAGGGGACGGTGTC 1959146 Query 10466 GATAGCCTCGAAGAGCTTG---TTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAG 10522 | || |||||| | || ||||| ||||| || | || ||||| Sbjct 1959147 CACGGCGCGGAAGAGGCGGGCCTTGGCCTCGG---AGTCCTTGATGTAGGTCTCCAGGAG 1959203 Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACG 10582 ||| ||| |||| ||||| | |||| || |||| | ||||||| || Sbjct 1959204 GAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCG 1959263 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| || | || ||| |||| ||| | ||||||||| | ||| ||||| Sbjct 1959264 GGCCTCGGCGACCTGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCC 1959323 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG 10702 ||| | | || |||||| |||||| ||| |||||||||||||||| || || | || Sbjct 1959324 GTCGGAGGCCGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAG 1959383 Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762 | | ||||| | || ||| ||| | ||||||||| | |||||||| | Sbjct 1959384 GTCCTGCTCCCAGTGCCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGA 1959443 Query 10763 GGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC--GCAGA 10819 || | |||||||||||||||| | || | ||||||| ||| |||||| ||||| Sbjct 1959444 CGCCTCCGCCTTCTTGTACATCTCCCAGATCTGCGGGTACCTGATCGGGAACATGCAGA 1959502 Score = 163 bits (180), Expect = 5e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| ||||| ||||| || ||||| || || |||| | Sbjct 4181329 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 4181270 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| || || | ||||||||||||||| ||||| | || ||||| || || Sbjct 4181269 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 4181210 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||| ||| || ||||| ||||| || ||||| ||||| | || ||||| Sbjct 4181209 ATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACC 4181150 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| |||||||| ||||| |||||||| Sbjct 4181149 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103 Score = 104 bits (114), Expect = 4e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7458126 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7458185 Query 84516 CCCAC 84520 ||||| Sbjct 7458186 CCCAC 7458190 >seq8 Length=7641483 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | || | ||| || || ||||| || |||||||| || || | Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||||||||| || || | || ||||| ||||| Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 6352013 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACC 6352072 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||| |||||||||||||| Sbjct 6352073 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 Score = 113 bits (124), Expect = 8e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||||||||| |||||| || || || ||||||| || |||||| || ||| || Sbjct 1233656 CTGGAGCATCAGCCACATGGCCTCCACGTAGTCCCCGGCGAAGCCCCAGTCCCGCGAGGC 1233715 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 | | ||| ||||||||||| |||| ||||| | ||| | | | | Sbjct 1233716 GGTTAGGTTGCCGAGGAACAGCTTGGTCTGGAGGCCGACTCGGATGCGGCCGACGGCCCT 1233775 Query 268366 AGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 ||||| || || || ||||| | ||||| || | || ||| |||||||||||||| Sbjct 1233776 GGTGATCTTCCGAGTGACGAAGTTTTCGCCGCGGCGGGGCGACTCATGGTTGAAGAGGAT 1233835 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 ||||||||| ||||| | ||| || || || |||||||| ||| ||||| || Sbjct 1233836 GCCGTTGCAAGCGAAGAGGCCGTAGGCTTCGCGGTAGTTGACGGTGTACCAGTGGGCGGC 1233895 Query 268486 CATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGT 268530 || ||| || | ||||| || || || || ||||||||||| || Sbjct 1233896 CACCTTGGCGGCGGCGTAGGGGGAGCGGGGGTGGAAGGGCGTGGT 1233940 >seq16 Length=4450370 Score = 178 bits (196), Expect = 2e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| ||| ||||||||||| || ||||||||||| |||| | Sbjct 3338530 CCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCG 3338471 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||||||||| || || | || ||||| || || Sbjct 3338470 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 3338411 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| ||| ||||||||||| | || || || Sbjct 3338410 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3338351 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || || ||||||||||| |||||||| Sbjct 3338350 TCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq2 Length=11374105 Score = 163 bits (180), Expect = 5e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| ||||| ||||| || ||||| || || |||| | Sbjct 483639 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 483698 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| || || | ||||||||||||||| ||||| | || ||||| || || Sbjct 483699 AGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 483758 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||| ||| || ||||| ||||| || ||||| ||||| | || ||||| Sbjct 483759 ATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACC 483818 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| |||||||| ||||| |||||||| Sbjct 483819 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 483865 Score = 104 bits (114), Expect = 4e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7094435 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7094376 Query 84516 CCCAC 84520 ||||| Sbjct 7094375 CCCAC 7094371 Score = 104 bits (114), Expect = 4e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 10374209 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10374150 Query 84516 CCCAC 84520 ||||| Sbjct 10374149 CCCAC 10374145 >seq5 Length=8147712 Score = 104 bits (114), Expect = 4e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7825807 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7825866 Query 84516 CCCAC 84520 ||||| Sbjct 7825867 CCCAC 7825871 >seq1 Length=14772968 Score = 104 bits (114), Expect = 4e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 9231308 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9231367 Query 84516 CCCAC 84520 ||||| Sbjct 9231368 CCCAC 9231372 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 ||||||||||| || ||||| ||||| || ||||| || || |||| | || || || Sbjct 5905284 CCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATC-GCTGCTCTCGACCTC 5905342 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| |||||||| ||||| |||||||| Sbjct 5905343 GAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 5905387 >seq14 Length=5602277 Score = 93.3 bits (102), Expect = 8e-14 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| |||||| || ||||| ||||||| || |||||| || || || Sbjct 2046599 CTGCAGCATCAGCCACATGGCCTCGACGTAGTCCCCGGCGAAGCCCCAGTCCCGGGAGGC 2046658 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTG---CCGAGCTTCACGCGTGCAAGACC 268362 || ||| |||||||| || || ||| | |||| | ||| | | | Sbjct 2046659 ACTCAGGTTGCCGAGGAAGAGC---TTGCGCTGGAGACCGATGCGGATGCGGCCGACGGC 2046715 Query 268363 GCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 || ||||| || || || ||||| ||||||| || | ||| |||||||||||||| Sbjct 2046716 CCGGGTGATCTTCCGCGTGACGAAGTTCTCGCCGCGGCGGGGGGATTCGTGGTTGAAGAG 2046775 Query 268423 GATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACG 268468 |||||||||||| || || | ||| || ||||| |||||||| ||| Sbjct 2046776 GATGCCGTTGCAGGCAAAGAGGCCGTAGGCCTCCCGGTAGTTGACG 2046821 >seq12 Length=5901629 Score = 89.7 bits (98), Expect = 9e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 ||||||||||| |||||||| ||||||||| ||||||||||| ||| | || || || Sbjct 201081 CCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTC-GCTACTCTCCACCTC 201139 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||| || || || || || ||||| ||||| ||||||||| Sbjct 201140 GAGGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATT 201185 >seq9 Length=6991192 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 ||| |||| ||||||||| ||| |||||||| |||| |||||| |||||||||||||| Sbjct 6458397 AGAACGCCGTCTTAGCTCAGCCGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTT 6458338 Query 84511 CGAGCCCCACA 84521 ||| ||||||| Sbjct 6458337 CGATCCCCACA 6458327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622169594400