Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq7 394 2e-104
>seq7
Length=7914316
Score = 394 bits (436), Expect = 2e-104
Identities = 649/927 (70%), Gaps = 45/927 (5%)
Strand=Plus/Minus
Query 42240 GAGCCGCTCCTGGCGCCGAGCAACTCCAGGTTCACCCTGGACGTGATCGAGCACCAGGAC 42299
||||| || |||||| ||| | | | ||||| | || | |||| | ||| | |
Sbjct 1959533 GAGCCCCTGCTGGCGGCGAACCCCGACCGGTTCTGCATGTTCCCGATCAGGTACCCGCAG 1959474
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| ||||||||||||||| || ||| |||||| || |||||| | |||||
Sbjct 1959473 ATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTC 1959414
Query 42360 GCCAAGGACACGGCCGGC--TGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTC 42410
|| | ||| ||||| |||||| |||| | | || || | |||
Sbjct 1959413 TCCCACGACCT--CCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCCAC----TTC 1959360
Query 42411 CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470
||| || | || ||||||||||| ||||| |||||||| || |||||||||||
Sbjct 1959359 ATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCS 1959300
Query 42471 ACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530
| | |||||||| ||||| ||| | ||||| ||| ||||||||||||||||||
Sbjct 1959299 GGCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATC 1959240
Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT 42590
||||| |||||| | ||||| ||| ||||| | || || | || |||||| |||
Sbjct 1959239 GCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGAC 1959180
Query 42591 CCCGTCGAGCGTAACG---GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647
||| || || | | || ||| ||| |||| || | |||||| |
Sbjct 1959179 TCCG---AGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGC 1959123
Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707
||||| |||||||| ||| ||||||||| |||| | |||| |||| | ||
Sbjct 1959122 AAGGCCGACTGGGCCCTCCGCTGGATCGACTCCTCCGAGTCC---TTCGCCGAGCGCCTC 1959066
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
|| ||||| || ||||||||||||||||||||| ||| |||| | |||||||||||
Sbjct 1959065 GTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGG 1959006
Query 42768 CTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826
|||||| || || || |||||||| ||||||||||| ||||| |||||| | | ||
Sbjct 1959005 CTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGA 1958947
Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886
|||||| || || | ||||| ||||||||||| | ||| || |||| | |||||
Sbjct 1958946 CGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCCGCTCCAAGCT 1958890
Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946
| | | || || |||| |||||| || | || ||||| ||||||||| ||| ||| |
Sbjct 1958889 CCCCGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGAGATCGAGCGGGACTTCGT 1958830
Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006
| | | || ||| | || ||||||||||| || | ||||||| | |||||||
Sbjct 1958829 CTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCCCTCATGGCCCAGTACAT 1958770
Query 43007 CCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TCTACAA 43060
| ||| ||||||||||| ||||| || | | ||| ||| || |||||
Sbjct 1958769 CGAGTTCGTCGCCGACCGCCTCCT---CC---TCGCCCTCGGCCACCCCAAGATCTAC-- 1958718
Query 43061 CACGCCG--TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118
||||||| ||||||||||| |||||| |||||| | ||||||||||||||||
Sbjct 1958717 CACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCAACTTC 1958658
Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||||||| ||| ||||||
Sbjct 1958657 TTCGAGAAGCGCGTCGGCGAGTACCAG 1958631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338963915200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |