Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 394 2e-104 >seq7 Length=7914316 Score = 394 bits (436), Expect = 2e-104 Identities = 649/927 (70%), Gaps = 45/927 (5%) Strand=Plus/Minus Query 42240 GAGCCGCTCCTGGCGCCGAGCAACTCCAGGTTCACCCTGGACGTGATCGAGCACCAGGAC 42299 ||||| || |||||| ||| | | | ||||| | || | |||| | ||| | | Sbjct 1959533 GAGCCCCTGCTGGCGGCGAACCCCGACCGGTTCTGCATGTTCCCGATCAGGTACCCGCAG 1959474 Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||||||| || ||| |||||| || |||||| | ||||| Sbjct 1959473 ATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTC 1959414 Query 42360 GCCAAGGACACGGCCGGC--TGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTC 42410 || | ||| ||||| |||||| |||| | | || || | ||| Sbjct 1959413 TCCCACGACCT--CCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCCAC----TTC 1959360 Query 42411 CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470 ||| || | || ||||||||||| ||||| |||||||| || ||||||||||| Sbjct 1959359 ATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCS 1959300 Query 42471 ACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530 | | |||||||| ||||| ||| | ||||| ||| |||||||||||||||||| Sbjct 1959299 GGCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATC 1959240 Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT 42590 ||||| |||||| | ||||| ||| ||||| | || || | || |||||| ||| Sbjct 1959239 GCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGAC 1959180 Query 42591 CCCGTCGAGCGTAACG---GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 ||| || || | | || ||| ||| |||| || | |||||| | Sbjct 1959179 TCCG---AGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGC 1959123 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 ||||| |||||||| ||| ||||||||| |||| | |||| |||| | || Sbjct 1959122 AAGGCCGACTGGGCCCTCCGCTGGATCGACTCCTCCGAGTCC---TTCGCCGAGCGCCTC 1959066 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| || ||||||||||||||||||||| ||| |||| | ||||||||||| Sbjct 1959065 GTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGG 1959006 Query 42768 CTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || || || |||||||| ||||||||||| ||||| |||||| | | || Sbjct 1959005 CTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGA 1958947 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||| || || | ||||| ||||||||||| | ||| || |||| | ||||| Sbjct 1958946 CGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCCGCTCCAAGCT 1958890 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 | | | || || |||| |||||| || | || ||||| ||||||||| ||| ||| | Sbjct 1958889 CCCCGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGAGATCGAGCGGGACTTCGT 1958830 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 | | | || ||| | || ||||||||||| || | ||||||| | ||||||| Sbjct 1958829 CTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCCCTCATGGCCCAGTACAT 1958770 Query 43007 CCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TCTACAA 43060 | ||| ||||||||||| ||||| || | | ||| ||| || ||||| Sbjct 1958769 CGAGTTCGTCGCCGACCGCCTCCT---CC---TCGCCCTCGGCCACCCCAAGATCTAC-- 1958718 Query 43061 CACGCCG--TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||||||| ||||||||||| |||||| |||||| | |||||||||||||||| Sbjct 1958717 CACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCAACTTC 1958658 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||||| ||| |||||| Sbjct 1958657 TTCGAGAAGCGCGTCGGCGAGTACCAG 1958631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338963915200