Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 152 1e-31 >seq7 Length=7914316 Score = 152 bits (168), Expect = 1e-31 Identities = 305/452 (67%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| |||||||||| | ||||| || || || | || ||||| || Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| |||||||||||||| ||| | |||| || | || || Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTC 1958904 Query 243466 CTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 |||| |||||| || ||| || ||| || | || || || || | | Sbjct 1958903 CTCCGCTCCAAGCTCCCCGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGAGATC 1958844 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || ||| ||| | |||||||| | || ||| ||| | |||||||| | ||| Sbjct 1958843 GAGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCCCTC 1958784 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 |||| ||||||||||| ||||| ||||||||| | || |||| || || | || Sbjct 1958783 ATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCCAAG 1958724 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | ||| || || |||||||| | || ||||||||||| || || || || || || Sbjct 1958723 ATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACC 1958664 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 1958663 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 1958632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879717387000