Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 1e-22
seq18 116 4e-21
seq8 105 8e-18
>seq7
Length=7914316
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
|||||| |||||||| ||||||||||| || || |||||| || || |||||||| ||
Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||| | |||||| || || || || || ||||||||||| ||||| || ||
Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207
||||| || | ||| ||||| || |||||
Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083
>seq18
Length=4131207
Score = 116 bits (128), Expect = 4e-21
Identities = 259/382 (68%), Gaps = 10/382 (3%)
Strand=Plus/Plus
Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834
||||||| || || || || | ||| || | || |||||| ||||| | |||
Sbjct 1496244 ACGGTGACCTGCCGGTCGAATCTACCAGGCCTCAGAAGGGCGGAATCAAGAACATCGGGC 1496303
Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 10891
||||| |||||||||| ||| | || ||| | ||| | ||||| ||||||||
Sbjct 1496304 CGGTTGGTCGCCGCGAGGACGATGACGCCGCT---GTTCCCGGAGAAGCCGTCCATCTCT 1496360
Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACT 10950
|| | ||| || |||||||| ||||| | || || ||| || || | | ||||| |
Sbjct 1496361 GTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCGCCGAGC-CCCGCTCC 1496419
Query 10951 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC- 11009
|| ||| | ||||||||||| || || |||||||| ||||| || || | || ||
Sbjct 1496420 TCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA-GGGGGCCTTGGACT 1496478
Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069
||| || |||| || | ||| | || || ||||| || || | ||||| |
Sbjct 1496479 TGGCCTTCTCGAAGAGGTCCCTGACCCGGGAAGCTCCCACACCGACGAAGAGCTCCACGA 1496538
Query 11070 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 11129
| | || ||||| || || |||||| ||| | || || |||| ||| ||||| |
Sbjct 1496539 ACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCCA 1496598
Query 11130 GGAGGGTCTTCCCCGTCCCAGG 11151
| || ||||||||||| || ||
Sbjct 1496599 GCAGCGTCTTCCCCGTGCCGGG 1496620
>seq8
Length=7641483
Score = 105 bits (116), Expect = 8e-18
Identities = 257/380 (68%), Gaps = 16/380 (4%)
Strand=Plus/Minus
Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878
||| ||||| || |||||| || || |||| ||| | ||| ||||| | | || ||
Sbjct 1765838 GTCGAGGATGTCCGCGCGGTTGGTGGCGGCGACGACGATGATCCCCGTGTTGCCCTCGAA 1765779
Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GC- 10936
||| |||||||| |||| ||| || |||| ||| || || | ||| || ||| | ||
Sbjct 1765778 GCCGTCCATCTCCGTCAGGAGCTGGTTGAGGGTCTGCTCCCTTTCGTCGTTCCCTCCGCC 1765719
Query 10937 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995
|| || | | || ||| | ||||||||||| || || |||| ||| ||||| ||
Sbjct 1765718 GATTCCTGTCCCCCTC---TGCCTCCCGACGGCGTCGATCTCGTCGACGAACACGATGCA 1765662
Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053
|| || || ||| |||| |||| || ||||| | | ||| ||||| ||
Sbjct 1765661 GGGGGCGTTCTCCTTGGC--CTTCTTGAAGAGGTCGCGGACCCGCGAGGCGCCGACCCCG 1765604
Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112
|| ||||| ||||| || | || | | | || | || |||||| ||| || || ||
Sbjct 1765603 ACGAACATCTCCACGAACTCGGACCCCG-AGATGGAGAAGAAGGGCACGCCGGCCTCGCC 1765545
Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACC 11172
|||||||| ||| || | |||||||| || || || ||| |||||| |||||
Sbjct 1765544 GGCGATGGCCTTGGCCAGCAACGTCTTCCCAGTTCCCGGGGGCCCGACGAGAA--GCACC 1765487
Query 11173 ACGT--GGGATCCTGGCACC 11190
| | ||||| | ||| ||
Sbjct 1765486 CCTTTGGGGATGCGGGCGCC 1765467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353450661600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |