Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq18 116 4e-21 seq8 105 8e-18 >seq7 Length=7914316 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || ||||||||||| ||||| || || Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||||| || | ||| ||||| || ||||| Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083 >seq18 Length=4131207 Score = 116 bits (128), Expect = 4e-21 Identities = 259/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || || || || | ||| || | || |||||| ||||| | ||| Sbjct 1496244 ACGGTGACCTGCCGGTCGAATCTACCAGGCCTCAGAAGGGCGGAATCAAGAACATCGGGC 1496303 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 10891 ||||| |||||||||| ||| | || ||| | ||| | ||||| |||||||| Sbjct 1496304 CGGTTGGTCGCCGCGAGGACGATGACGCCGCT---GTTCCCGGAGAAGCCGTCCATCTCT 1496360 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACT 10950 || | ||| || |||||||| ||||| | || || ||| || || | | ||||| | Sbjct 1496361 GTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCGCCGAGC-CCCGCTCC 1496419 Query 10951 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC- 11009 || ||| | ||||||||||| || || |||||||| ||||| || || | || || Sbjct 1496420 TCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA-GGGGGCCTTGGACT 1496478 Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069 ||| || |||| || | ||| | || || ||||| || || | ||||| | Sbjct 1496479 TGGCCTTCTCGAAGAGGTCCCTGACCCGGGAAGCTCCCACACCGACGAAGAGCTCCACGA 1496538 Query 11070 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 11129 | | || ||||| || || |||||| ||| | || || |||| ||| ||||| | Sbjct 1496539 ACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCCA 1496598 Query 11130 GGAGGGTCTTCCCCGTCCCAGG 11151 | || ||||||||||| || || Sbjct 1496599 GCAGCGTCTTCCCCGTGCCGGG 1496620 >seq8 Length=7641483 Score = 105 bits (116), Expect = 8e-18 Identities = 257/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 ||| ||||| || |||||| || || |||| ||| | ||| ||||| | | || || Sbjct 1765838 GTCGAGGATGTCCGCGCGGTTGGTGGCGGCGACGACGATGATCCCCGTGTTGCCCTCGAA 1765779 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GC- 10936 ||| |||||||| |||| ||| || |||| ||| || || | ||| || ||| | || Sbjct 1765778 GCCGTCCATCTCCGTCAGGAGCTGGTTGAGGGTCTGCTCCCTTTCGTCGTTCCCTCCGCC 1765719 Query 10937 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 || || | | || ||| | ||||||||||| || || |||| ||| ||||| || Sbjct 1765718 GATTCCTGTCCCCCTC---TGCCTCCCGACGGCGTCGATCTCGTCGACGAACACGATGCA 1765662 Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || || || ||| |||| |||| || ||||| | | ||| ||||| || Sbjct 1765661 GGGGGCGTTCTCCTTGGC--CTTCTTGAAGAGGTCGCGGACCCGCGAGGCGCCGACCCCG 1765604 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112 || ||||| ||||| || | || | | | || | || |||||| ||| || || || Sbjct 1765603 ACGAACATCTCCACGAACTCGGACCCCG-AGATGGAGAAGAAGGGCACGCCGGCCTCGCC 1765545 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACC 11172 |||||||| ||| || | |||||||| || || || ||| |||||| ||||| Sbjct 1765544 GGCGATGGCCTTGGCCAGCAACGTCTTCCCAGTTCCCGGGGGCCCGACGAGAA--GCACC 1765487 Query 11173 ACGT--GGGATCCTGGCACC 11190 | | ||||| | ||| || Sbjct 1765486 CCTTTGGGGATGCGGGCGCC 1765467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353450661600