Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq16 107 2e-18 seq7 105 7e-18 seq2 105 7e-18 seq8 100 3e-16 >seq16 Length=4450370 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | |||| || | ||| |||||| || || || || || || Sbjct 3338530 CCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCG 3338471 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 3338470 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 3338411 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || || | ||| | | | ||||| || ||||| Sbjct 3338410 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 3338352 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||| ||||| || || ||||| || ||||| ||||| Sbjct 3338351 CTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq7 Length=7914316 Score = 105 bits (116), Expect = 7e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || ||||| | | |||| || |||||||| || ||||| Sbjct 4181294 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 4181235 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||| |||| ||| || || | | Sbjct 4181234 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 4181175 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || |||| |||||| || || ||||| || ||||| || Sbjct 4181174 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 4181115 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 4181114 GAAGATCTGCAT 4181103 >seq2 Length=11374105 Score = 105 bits (116), Expect = 7e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || ||||| | | |||| || |||||||| || ||||| Sbjct 483674 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 483733 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||| |||| ||| || || | | Sbjct 483734 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 483793 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || |||| |||||| || || ||||| || ||||| || Sbjct 483794 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 483853 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 483854 GAAGATCTGCAT 483865 >seq8 Length=7641483 Score = 100 bits (110), Expect = 3e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 6351928 CTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 6351987 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | ||||||||| ||| || |||| ||| Sbjct 6351988 GATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 6352046 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 6352047 TGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCA 6352106 Query 42196 CAAAGATTTGCAT 42208 | || || ||||| Sbjct 6352107 CGAATATCTGCAT 6352119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212664196800