Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 116 4e-21 seq8 107 2e-18 seq2 105 7e-18 seq16 93.3 4e-14 >seq7 Length=7914316 Score = 116 bits (128), Expect = 4e-21 Identities = 296/447 (66%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 ||||||||| | || ||||||||| ||||||||| | || || ||||||||||| | Sbjct 1959077 GCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 1959018 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||||| | | || | | ||| | ||||||||||| || ||| ||||||| | Sbjct 1959017 GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 1958958 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || || |||||||| || || ||| ||||| || |||||| |||| | | | | Sbjct 1958957 ATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC---TCCCTCCTC 1958901 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 | || | ||| ||| ||| || || || || | ||||| Sbjct 1958900 CGCTCCAAGCTCCCCGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGAGATCGAG 1958841 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA-CGCGCAGTCCAT 52690 ||| || | | ||| || || || ||| | |||||||| | || | ||| Sbjct 1958840 CGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCCCT-CAT 1958782 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTA 52750 | | ||||||||||||| || || || || || | | ||||| || || ||| Sbjct 1958781 GGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCCAAGAT 1958722 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 || | |||| ||| || || || | ||| | ||| || || ||||||||||||| Sbjct 1958721 CTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCAA 1958662 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| ||||||||||| Sbjct 1958661 CTTCTTCGAGAAGCGCGTCGGCGAGTA 1958635 Score = 105 bits (116), Expect = 7e-18 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| | ||| | | ||||||||| || || |||| Sbjct 4181296 GACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCG 4181237 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || | ||| ||| || || | | Sbjct 4181236 AAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACA 4181177 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||||| | ||||| ||||||| ||| | ||| || || ||||| || || Sbjct 4181176 TTGT-CGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTT 4181118 Query 138600 TACAAAAATCTGCATGGCT 138618 || || |||||||||||| Sbjct 4181117 CACGAAGATCTGCATGGCT 4181099 >seq8 Length=7641483 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGT-CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || |||||||||| |||| | || || ||||||||| || || |||| Sbjct 6351926 GACTCCTTCTGGATGTTGTAGTCCGCT-AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGC 6351984 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| || ||||| |||||||| ||||| ||||| ||||| ||| || || | Sbjct 6351985 GAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTTGGCCTTGAC 6352044 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||||||||||||| || | ||| || || || || || || Sbjct 6352045 GTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTT 6352104 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 6352105 CACGAATATCTGCAT 6352119 >seq2 Length=11374105 Score = 105 bits (116), Expect = 7e-18 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| | ||| | | ||||||||| || || |||| Sbjct 483672 GACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCG 483731 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || | ||| ||| || || | | Sbjct 483732 AAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACA 483791 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||||| | ||||| ||||||| ||| | ||| || || ||||| || || Sbjct 483792 TTGT-CGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTT 483850 Query 138600 TACAAAAATCTGCATGGCT 138618 || || |||||||||||| Sbjct 483851 CACGAAGATCTGCATGGCT 483869 >seq16 Length=4450370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| | || || |||||| || || || |||| Sbjct 3338497 GACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCG 3338438 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 3338437 AAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACG 3338378 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || || ||||| || Sbjct 3338377 TTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTG 3338318 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3338317 ACGAAGATCTGCAT 3338304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262275934400