Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 170 2e-37 seq16 105 6e-18 seq2 100 3e-16 seq3 89.7 5e-13 >seq7 Length=7914316 Score = 170 bits (188), Expect = 2e-37 Identities = 312/448 (70%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGC 47191 ||||| || | |||| |||||| |||||||||| |||||||||| |||||||| ||| Sbjct 1959077 GCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 1959018 Query 47192 GGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCT 47251 | | || || | | || | || | |||||||||||||| || ||||||||| Sbjct 1959017 GCC-ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCT 1958959 Query 47252 AATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGT 47311 ||||| | ||||| ||||| ||| | |||| ||||| ||| |||| | || Sbjct 1958958 CATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC-CTCCTC- 1958901 Query 47312 CGATCAAAAGTTGGACGT-GCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG 47370 || || || | | || | || || || ||| ||| | ||||| ||||||| || | Sbjct 1958900 CGCTCCAA-GCTCCCCGACGACCGCC-TCCGCGCCATCGTCGCCGACGCCGTCGAGATCG 1958843 Query 47371 AGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGA 47430 || ||| || || ||| || || ||| | | || || ||||| || | | Sbjct 1958842 AGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCCCTCA 1958783 Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGA 47490 || |||||||||| || |||||||||||||| ||| | || | ||||||| Sbjct 1958782 TGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCCAAGA 1958723 Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 | |||||| ||| || || ||||| | ||| | ||| || ||| |||||||||||| Sbjct 1958722 TCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCA 1958663 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| |||||||||||||||||||| || Sbjct 1958662 ACTTCTTCGAGAAGCGCGTCGGCGAGTA 1958635 Score = 100 bits (110), Expect = 3e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | ||| | || | ||| ||||| || || |||||||| ||| Sbjct 4181332 GCACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCG 4181273 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || | || || ||||| || || ||| |||| | |||||||| || || Sbjct 4181272 GCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGC 4181213 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||| |||| ||| || ||| | | |||| ||||| | | ||| Sbjct 4181212 GGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCT 4181153 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||| || | ||| || || ||||| || || || || |||||||||||| Sbjct 4181152 ACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 4181099 >seq16 Length=4450370 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| || | ||| ||||| || || || || || ||| | | ||||| || || Sbjct 3338512 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCC 3338453 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| |||||| |||||||| || || || ||||||||||||||| | Sbjct 3338452 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3338393 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | |||| |||| |||||||| ||| || || | || | || || Sbjct 3338392 ATCTTAGCCTTCACGTTG-TCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTT 3338334 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| || || || |||||||| Sbjct 3338333 GCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq2 Length=11374105 Score = 100 bits (110), Expect = 3e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | ||| | || | ||| ||||| || || |||||||| ||| Sbjct 483636 GCACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCG 483695 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || | || || ||||| || || ||| |||| | |||||||| || || Sbjct 483696 GCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGC 483755 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||| |||| ||| || ||| | | |||| ||||| | | ||| Sbjct 483756 GGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCT 483815 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||| || | ||| || || ||||| || || || || |||||||||||| Sbjct 483816 ACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 483869 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| | |||||| || || || |||||||||||| Sbjct 8500473 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTG 8500532 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| ||| || | ||| || || | ||| | Sbjct 8500533 TCCTGGATCTTCGCCTTGACGTTG-TCGATGGTATCGGAGGACTCCACCTCAAGGGTGAT 8500591 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| ||||| || || || |||||||| Sbjct 8500592 AGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500681124800