Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq7 170 2e-37
seq16 105 6e-18
seq2 100 3e-16
seq3 89.7 5e-13
>seq7
Length=7914316
Score = 170 bits (188), Expect = 2e-37
Identities = 312/448 (70%), Gaps = 7/448 (2%)
Strand=Plus/Minus
Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGC 47191
||||| || | |||| |||||| |||||||||| |||||||||| |||||||| |||
Sbjct 1959077 GCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 1959018
Query 47192 GGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCT 47251
| | || || | | || | || | |||||||||||||| || |||||||||
Sbjct 1959017 GCC-ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCT 1958959
Query 47252 AATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGT 47311
||||| | ||||| ||||| ||| | |||| ||||| ||| |||| | ||
Sbjct 1958958 CATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC-CTCCTC- 1958901
Query 47312 CGATCAAAAGTTGGACGT-GCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG 47370
|| || || | | || | || || || ||| ||| | ||||| ||||||| || |
Sbjct 1958900 CGCTCCAA-GCTCCCCGACGACCGCC-TCCGCGCCATCGTCGCCGACGCCGTCGAGATCG 1958843
Query 47371 AGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGA 47430
|| ||| || || ||| || || ||| | | || || ||||| || | |
Sbjct 1958842 AGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCCCTCA 1958783
Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGA 47490
|| |||||||||| || |||||||||||||| ||| | || | |||||||
Sbjct 1958782 TGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCCAAGA 1958723
Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550
| |||||| ||| || || ||||| | ||| | ||| || ||| ||||||||||||
Sbjct 1958722 TCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCA 1958663
Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| |||||||||||||||||||| ||
Sbjct 1958662 ACTTCTTCGAGAAGCGCGTCGGCGAGTA 1958635
Score = 100 bits (110), Expect = 3e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| |||||||| | || | ||| | || | ||| ||||| || || |||||||| |||
Sbjct 4181332 GCACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCG 4181273
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | || | || || ||||| || || ||| |||| | |||||||| || ||
Sbjct 4181272 GCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGC 4181213
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || ||||||| |||| ||| || ||| | | |||| ||||| | | |||
Sbjct 4181212 GGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCT 4181153
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
|| |||| || | ||| || || ||||| || || || || ||||||||||||
Sbjct 4181152 ACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 4181099
>seq16
Length=4450370
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| || | ||| ||||| || || || || || ||| | | ||||| || ||
Sbjct 3338512 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCC 3338453
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| || || ||| |||||| |||||||| || || || ||||||||||||||| |
Sbjct 3338452 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3338393
Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|| || ||| | |||| |||| |||||||| ||| || || | || | || ||
Sbjct 3338392 ATCTTAGCCTTCACGTTG-TCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTT 3338334
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||| ||||| || || || ||||||||
Sbjct 3338333 GCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304
>seq2
Length=11374105
Score = 100 bits (110), Expect = 3e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| |||||||| | || | ||| | || | ||| ||||| || || |||||||| |||
Sbjct 483636 GCACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCG 483695
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | || | || || ||||| || || ||| |||| | |||||||| || ||
Sbjct 483696 GCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGC 483755
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || ||||||| |||| ||| || ||| | | |||| ||||| | | |||
Sbjct 483756 GGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCT 483815
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
|| |||| || | ||| || || ||||| || || || || ||||||||||||
Sbjct 483816 ACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 483869
>seq3
Length=8976907
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||||| | |||||| || || || ||||||||||||
Sbjct 8500473 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTG 8500532
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| ||| ||||| |||| |||| ||| || | ||| || || | ||| |
Sbjct 8500533 TCCTGGATCTTCGCCTTGACGTTG-TCGATGGTATCGGAGGACTCCACCTCAAGGGTGAT 8500591
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || ||||| ||||| || || || ||||||||
Sbjct 8500592 AGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500681124800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |