Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 seq16 89.7 5e-13 >seq8 Length=7641483 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 ||||||||||| | | ||| || ||||| || || ||||| ||||| || || || ||| Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | |||| || || | || || || ||| | |||| || ||||||||||| || Sbjct 6351953 -AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 6352011 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || ||||| || || || || || |||| || | || | |||||| |||||||| | Sbjct 6352012 TATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCRGAAGACTCCA 6352070 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || | ||| || || || || || || || || || |||||| Sbjct 6352071 CCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCATC 6352120 >seq16 Length=4450370 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || ||||| || ||||| ||||| ||||| ||| Sbjct 3338533 ATGCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCG 3338474 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||| || || || ||| | |||| || ||||||||||| Sbjct 3338473 GCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGG 3338414 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | |||||| || ||||| Sbjct 3338413 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTC 3338355 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | || | || |||||||| ||||| || || || || |||||| Sbjct 3338354 CACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATC 3338303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003086999200