Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq8 100 3e-16
seq16 89.7 5e-13
>seq8
Length=7641483
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172
||||||||||| | | ||| || ||||| || || ||||| ||||| || || || |||
Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| |||| || || | || || || ||| | |||| || ||||||||||| ||
Sbjct 6351953 -AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 6352011
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291
|| ||||| || || || || || |||| || | || | |||||| |||||||| |
Sbjct 6352012 TATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCRGAAGACTCCA 6352070
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| ||||| || | ||| || || || || || || || || || ||||||
Sbjct 6352071 CCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCATC 6352120
>seq16
Length=4450370
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | ||| | | || || || ||||| || ||||| ||||| ||||| |||
Sbjct 3338533 ATGCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCG 3338474
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || |||| || || || ||| | |||| || |||||||||||
Sbjct 3338473 GCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGG 3338414
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || || || || || | || | || | |||||| || |||||
Sbjct 3338413 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTC 3338355
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || | || | || |||||||| ||||| || || || || ||||||
Sbjct 3338354 CACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATC 3338303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003086999200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |