Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq8 134 2e-26 seq3 116 5e-21 seq19 87.8 2e-12 >seq2 Length=11374105 Score = 143 bits (158), Expect = 3e-29 Identities = 133/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 8025 AGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAG 8084 ||||||| |||||||| || || ||||||||| | ||||| ||| |||||||| | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 8085 GATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCC 8144 | |||| | ||| ||||||| || || || || ||||| || ||||| ||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 8145 AGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 | ||||||||||| | |||| || ||||||||||||||||||||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq8 Length=7641483 Score = 134 bits (148), Expect = 2e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| | ||||| | ||| ||||||||||||| ||||||||| || ||||| |||||||| Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 |||||| |||| |||||| | || | ||| | || | ||||||| || ||| Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCA 525141 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | ||||| ||||| || | |||| |||| |||||||| ||||| || |||| ||| | | Sbjct 525140 ACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAA 525081 Query 7709 GCAGTGAACCAGAT 7722 ||| | ||||| || Sbjct 525080 GCAATAAACCAAAT 525067 >seq3 Length=8976907 Score = 116 bits (128), Expect = 5e-21 Identities = 156/213 (73%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 8072 CCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTAT 8131 |||||||| | | | |||| | || ||||||| || || || || ||||| || ||| Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884 Query 8132 GCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATG 8191 || ||| ||||| ||| ||||||| |||||| || |||||||||||||||| ||||| Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824 Query 8192 TATGCATAG--ATACCGATCAGGAAGTG--GAAGATAAC---GAGTTGGAAAGGACCACC 8244 || ||| || | ||| | | |||||| ||| | ||| || | | ||||||| || Sbjct 715823 TA-GCA-AGCTACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGCC 715766 Query 8245 GTTGTAGAGCCACTCATCAAGAGAAGCTGCTTC 8277 ||||| | ||||| ||||| | | || ||||| Sbjct 715765 ATTGTATAACCACTAATCAACATATGCGGCTTC 715733 >seq19 Length=3929835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596 ||| | ||| |||| |||||||||||||||||| || ||||| |||||||| ||||| Sbjct 3082549 AGCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 3082490 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACAC 7634 ||||||||||| | || ||||| ||||| | |||| Sbjct 3082489 AGCACGGTTGATAATATCAGCCCAAGTGTTAATAACAC 3082452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124644468800