Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
seq8 134 2e-26
seq3 116 5e-21
seq19 87.8 2e-12
>seq2
Length=11374105
Score = 143 bits (158), Expect = 3e-29
Identities = 133/169 (79%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 8025 AGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAG 8084
||||||| |||||||| || || ||||||||| | ||||| ||| |||||||| | ||
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 8085 GATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCC 8144
| |||| | ||| ||||||| || || || || ||||| || ||||| ||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 8145 AGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193
| ||||||||||| | |||| || |||||||||||||||||||||||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607
>seq8
Length=7641483
Score = 134 bits (148), Expect = 2e-26
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588
||| | ||||| | ||| ||||||||||||| ||||||||| || ||||| ||||||||
Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201
Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648
|||||| |||| |||||| | || | ||| | || | ||||||| || |||
Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCA 525141
Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708
| ||||| ||||| || | |||| |||| |||||||| ||||| || |||| ||| | |
Sbjct 525140 ACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAA 525081
Query 7709 GCAGTGAACCAGAT 7722
||| | ||||| ||
Sbjct 525080 GCAATAAACCAAAT 525067
>seq3
Length=8976907
Score = 116 bits (128), Expect = 5e-21
Identities = 156/213 (73%), Gaps = 9/213 (4%)
Strand=Plus/Minus
Query 8072 CCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTAT 8131
|||||||| | | | |||| | || ||||||| || || || || ||||| || |||
Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884
Query 8132 GCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATG 8191
|| ||| ||||| ||| ||||||| |||||| || |||||||||||||||| |||||
Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824
Query 8192 TATGCATAG--ATACCGATCAGGAAGTG--GAAGATAAC---GAGTTGGAAAGGACCACC 8244
|| ||| || | ||| | | |||||| ||| | ||| || | | ||||||| ||
Sbjct 715823 TA-GCA-AGCTACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGCC 715766
Query 8245 GTTGTAGAGCCACTCATCAAGAGAAGCTGCTTC 8277
||||| | ||||| ||||| | | || |||||
Sbjct 715765 ATTGTATAACCACTAATCAACATATGCGGCTTC 715733
>seq19
Length=3929835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596
||| | ||| |||| |||||||||||||||||| || ||||| |||||||| |||||
Sbjct 3082549 AGCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 3082490
Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACAC 7634
||||||||||| | || ||||| ||||| | ||||
Sbjct 3082489 AGCACGGTTGATAATATCAGCCCAAGTGTTAATAACAC 3082452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622124644468800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |