Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 127 3e-24 seq18 122 1e-22 seq8 109 7e-19 >seq7 Length=7914316 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||| ||||||||||| ||||| || || Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || | || |||||||| ||||| Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083 >seq18 Length=4131207 Score = 122 bits (134), Expect = 1e-22 Identities = 260/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || || || || | ||| || | || |||||| ||||| | ||| Sbjct 1496244 ACGGTGACCTGCCGGTCGAATCTACCAGGCCTCAGAAGGGCGGAATCAAGAACATCGGGC 1496303 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 ||||| |||||||||| ||| | || ||| | ||| || ||||| |||||||| Sbjct 1496304 CGGTTGGTCGCCGCGAGGACGATGACGCCGCT---GTTCCCGGAGAAGCCGTCCATCTCT 1496360 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACT 12865 || | ||| || |||||||| ||||| | || || ||| || || | | ||||| | Sbjct 1496361 GTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCGCCGAGC-CCCGCTCC 1496419 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC- 12924 || ||| | ||||||||||| || ||||| ||||| ||||| || || | || || Sbjct 1496420 TCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA-GGGGGCCTTGGACT 1496478 Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984 ||| || |||| || | || | || || ||||| || || | |||||| | Sbjct 1496479 TGGCCTTCTCGAAGAGGTCCCTGACCCGGGAAGCTCCCACACCGACGAAGAGCTCCACGA 1496538 Query 12985 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 13044 | | || ||||| || || |||||| ||| | || || |||| ||| ||||| | Sbjct 1496539 ACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCCA 1496598 Query 13045 GGAGGGTCTTCCCCGTCCCTGG 13066 | || ||||||||||| || || Sbjct 1496599 GCAGCGTCTTCCCCGTGCCGGG 1496620 >seq8 Length=7641483 Score = 109 bits (120), Expect = 7e-19 Identities = 258/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 ||| ||||| || |||||| || || |||| ||| | ||| ||||| | | ||||| Sbjct 1765838 GTCGAGGATGTCCGCGCGGTTGGTGGCGGCGACGACGATGATCCCCGTGTTGCCCTCGAA 1765779 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG-GC- 12851 ||| |||||||| |||| ||| || |||| ||| || || | ||| || ||| | || Sbjct 1765778 GCCGTCCATCTCCGTCAGGAGCTGGTTGAGGGTCTGCTCCCTTTCGTCGTTCCCTCCGCC 1765719 Query 12852 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 || || | | || ||| | ||||||||||| || ||||| | ||| ||||| || Sbjct 1765718 GATTCCTGTCCCCCTC---TGCCTCCCGACGGCGTCGATCTCGTCGACGAACACGATGCA 1765662 Query 12911 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || || || ||| |||| |||| || || || | | ||| ||||| || Sbjct 1765661 GGGGGCGTTCTCCTTGGC--CTTCTTGAAGAGGTCGCGGACCCGCGAGGCGCCGACCCCG 1765604 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 || ||||||||||| || | || | | | || | || |||||| ||| || || || Sbjct 1765603 ACGAACATCTCCACGAACTCGGACCCCG-AGATGGAGAAGAAGGGCACGCCGGCCTCGCC 1765545 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 |||||||| ||| || | |||||||| || || || ||| |||||| ||||| Sbjct 1765544 GGCGATGGCCTTGGCCAGCAACGTCTTCCCAGTTCCCGGGGGCCCGACGAGAA--GCACC 1765487 Query 13088 ACGT--GGGATCCTGGCACC 13105 | | ||||| | ||| || Sbjct 1765486 CCTTTGGGGATGCGGGCGCC 1765467 Score = 102 bits (112), Expect = 1e-16 Identities = 235/351 (67%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 10501 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 10560 ||||||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 1233937 ACGCCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTGGCCGCCCACTGGTACACC 1233878 Query 10561 AAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAG 10620 || || |||||| |||| || ||||| | ||| ||| || ||||||||||| ||| Sbjct 1233877 GTCAACTACCGCGAAGCCTACGGCCTCTTCGCTTGCAACGGCATCCTCTTCAACCATGAG 1233818 Query 10621 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC 10680 || ||||| || ||| | ||||| || |||||||||| | || | ||| Sbjct 1233817 TCGCCCCGCCGCGGCGAAAACTTCGTCACTCGGAAGATCACCAGGGCCGTCGGCCGCATC 1233758 Query 10681 -GTGGCGGGTG--AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 10737 | | ||| ||| || | | | || ||||| | |||| | |||||||| Sbjct 1233757 CGAGTCGGCCTCCAGACCAAGCTGTTCC---TCGGCAACCTAACCGCCTCGCGGGACTGG 1233701 Query 10738 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGAC 10797 || |||| |||||| || || ||||||||||| | ||||| || || || | ||| Sbjct 1233700 GGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTGATGCTCCAGCAGGACAAGCCCGAC 1233641 Query 10798 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 || || || ||||| || | |||| | ||| |||| ||||||| | ||| Sbjct 1233640 GACTACGTGGTCGCCACCGAGGAGTCCCACACCGTGGAGGAGTTCCTCGAG 1233590 Score = 102 bits (112), Expect = 1e-16 Identities = 256/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || || ||||| | || || | || |||||| ||| || | ||| | Sbjct 1565012 ACGGTGACCTGCCGGTCAAACCTGCCGGGCCTCAGAAGGGCGGAGTCGAGAACATCGGGG 1564953 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 ||||| || || |||| ||| | || || | ||| || ||||| |||||||| Sbjct 1564952 CGGTTGGTAGCGGCGAGGACGATGACTCCGCT---GTTCCCGGAGAAGCCGTCCATCTCG 1564896 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACT 12865 |||| || || |||||||| || || | || || ||| || || | ||||| | Sbjct 1564895 GTCAGAAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGAGT-CCCGCTCC 1564837 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 || ||| | ||||||||||| || || || ||||| ||||| || || | ||| | Sbjct 1564836 TCGCTGCCTCCCGACGGCGTCGATCTCATCGATGAAGACGATGCAGGG--GGCCTTCGCC 1564779 Query 12926 GGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 | || || || | || | ||||||| || || || || || || | |||||| Sbjct 1564778 TTCGCCTTCTCGAACAGGTCCCTCACTCTCGAAGCTCCCACGCCGACGAAAAGCTCCACG 1564719 Query 12984 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 13043 || | || |||| || || |||||| ||| || ||| || |||| || ||||| Sbjct 1564718 AACTCGGAAGCGGCGCAGGAGAAGAAGGGCACGCCGGCTTCTCCGGCGACTGCGCGGGCC 1564659 Query 13044 AGGAGGGTCTTCCCCGTCCCTGG 13066 || || |||||||| || || || Sbjct 1564658 AGCAGCGTCTTCCCGGTGCCGGG 1564636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507046623200