Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7 143 4e-29 >seq7 Length=7914316 Score = 143 bits (158), Expect = 4e-29 Identities = 387/586 (66%), Gaps = 7/586 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 1958914 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 1958973 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCT 160035 ||||||| ||||||| || ||| |||||||| || |||| |||| |||| ||| Sbjct 1958974 GTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCGGA 1959032 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 || ||||| ||||| ||| || || || ||||| | ||| | || || || || Sbjct 1959033 GAAGAAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGA 1959092 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGAC 160155 ||| | |||| | |||||| || ||||| || | ||| || | | || || Sbjct 1959093 GTC---GATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCAC 1959149 Query 160156 GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215 |||| || | | | ||| ||| |||||||| || | | || Sbjct 1959150 GGCGCGGAAGAGGCGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCT 1959209 Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 |||||| || | ||| | || |||||||| ||||| ||| |||||| ||||| Sbjct 1959210 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTC 1959269 Query 160276 CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 ||| ||||||| |||| | |||| || | || | ||||||| Sbjct 1959270 GGCGACCTGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGA 1959329 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTT 160395 |||||| ||||| || | ||||| | |||||| || | |||||| | |||| || Sbjct 1959330 GGCCGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTG 1959389 Query 160396 TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTG 160455 |||||||| | ||| |||| | || ||||| ||||| |||| || |||| Sbjct 1959390 CTCCCAGTGCCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTC 1959449 Query 160456 AGCAGTTTTGTACATGGCCCAGAT-GGCGTGCTCTCTGATCGGAAA 160500 || | |||||||| ||||||| ||| | | |||||||| || Sbjct 1959450 CGCCTTCTTGTACATCTCCCAGATCTGCG-GGTACCTGATCGGGAA 1959494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155001211200