Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7 149 1e-30 seq2 149 1e-30 seq16 145 2e-29 seq8 138 3e-27 seq18 87.8 4e-12 seq3 86.0 1e-11 >seq7 Length=7914316 Score = 149 bits (164), Expect = 1e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| |||||||| || | ||| || || || Sbjct 4181314 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCC 4181255 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC-TCGCTC 199536 || |||||||| |||||||||||||| |||||||||||||| || || || | | || Sbjct 4181254 TCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYG-TC 4181196 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| |||| ||||| | | ||||| || | ||||||||| Sbjct 4181195 CTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGT 4181136 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 4181135 CTTCCCCGTCAGGGTCTTCACGAAGATCTG 4181106 >seq2 Length=11374105 Score = 149 bits (164), Expect = 1e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| |||||||| || | ||| || || || Sbjct 483654 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCC 483713 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT-TCCTTCTCGCTC 199536 || |||||||| |||||||||||||| |||||||||||||| || ||| || | || Sbjct 483714 TCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYG-TC 483772 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| |||| ||||| | | ||||| || | ||||||||| Sbjct 483773 CTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGT 483832 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 483833 CTTCCCCGTCAGGGTCTTCACGAAGATCTG 483862 >seq16 Length=4450370 Score = 145 bits (160), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||| ||||| || | || | || || Sbjct 3338515 AGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCC 3338456 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| ||||||||||||||||| || || || ||| Sbjct 3338455 TCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3338396 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| |||||| ||| Sbjct 3338395 TGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTC 3338336 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 3338335 TTGCCGGTAAGAGTCTTGACGAAGATCTG 3338307 >seq8 Length=7641483 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| || | || | || || Sbjct 6351908 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCC 6351967 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || |||||||||||||| || ||||| ||| Sbjct 6351968 TCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCC 6352027 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 6352028 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTC 6352087 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || ||||| || || || Sbjct 6352088 TTCCCCGTGAGGGTCTTCACGAATATCTG 6352116 >seq18 Length=4131207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || |||| ||| ||||| || ||||||||||| |||| ||||||||| || | ||| | Sbjct 771098 AGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGG 771157 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || || ||||||||||| || || || || | | ||||||||| ||| Sbjct 771158 CCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGA 771205 >seq3 Length=8976907 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || ||||||||||| ||||||||||| || | |||||||||||| || || || Sbjct 8500470 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 8500529 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| ||| |||| ||| || | | || || || | ||| Sbjct 8500530 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || |||||||| ||||| || || || Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTG 8500624 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || ||||||||||||| |||||| || |||| || | || || Sbjct 8500006 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCC 8500065 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAG 199503 ||||||||||| ||||||||||| || Sbjct 8500066 TCCAGCTGCTTGCCGGCGAAGATCAG 8500091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921297901340