Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq16 138 1e-27
seq7 123 3e-23
seq2 123 3e-23
seq8 114 1e-20
seq3 93.3 5e-14
seq12 89.7 6e-13
>seq16
Length=4450370
Score = 138 bits (152), Expect = 1e-27
Identities = 170/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | ||| | ||||| || | || |||||| ||||| || |||||||
Sbjct 3338532 TGCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGG 3338473
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| ||||| |||| || |||||||| |||||||| |||| ||||||||||| | |
Sbjct 3338472 CGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGG 3338413
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | || |||||||||| |||||| ||| | ||| | | | ||||| || |||
Sbjct 3338412 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCC 3338354
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||||||| ||||| || || || || || ||||| |||||
Sbjct 3338353 ACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304
>seq7
Length=7914316
Score = 123 bits (136), Expect = 3e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||||| ||||| | | |||| ||||||||||| ||||||||
Sbjct 4181294 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 4181235
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | ||| | | ||||| |||| |||||| ||| | |
Sbjct 4181234 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 4181175
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | |||||| || || |||||||| || || ||
Sbjct 4181174 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 4181115
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 4181114 GAAGATCTGCAT 4181103
>seq2
Length=11374105
Score = 123 bits (136), Expect = 3e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||||| ||||| | | |||| ||||||||||| ||||||||
Sbjct 483674 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 483733
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | ||| | | ||||| |||| |||||| ||| | |
Sbjct 483734 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 483793
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | |||||| || || |||||||| || || ||
Sbjct 483794 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 483853
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 483854 GAAGATCTGCAT 483865
>seq8
Length=7641483
Score = 114 bits (126), Expect = 1e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| || |||| || |||||| ||||| |||||||| | ||| || || |||| ||
Sbjct 6351910 CACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTC 6351969
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||| |||||||| |||| ||||||||||| | || | | |||||||||
Sbjct 6351970 GAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTG 6352029
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
|||||| ||||| ||| | | | ||||| || ||||| || | ||||| || |
Sbjct 6352030 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCT 6352088
Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| ||||| || || || || || || |||||
Sbjct 6352089 TCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq3
Length=8976907
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496
|||| || ||||||||||||||||| |||| | ||||||||| | || | || |||||
Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530
Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTG 46555
||||| ||||||| ||||| ||| | | | || ||| || ||||| || | |||
Sbjct 8500531 TGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589
Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || || || || ||||| |||||
Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627
>seq12
Length=5901629
Score = 89.7 bits (98), Expect = 6e-13
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| |||||||||||||| | || || ||| |||| ||||| |||||||||||||||
Sbjct 200822 CCTTTCTGGATATTGTAGTCCGCAAGGGTACGCCCGTCCTCGAGTTGCTTGCCGGCGAAT 200881
Query 46463 ATCAAGCGCTGCTGGTCGG 46481
|||| |||||||||||||
Sbjct 200882 ATCAGACGCTGCTGGTCGG 200900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238258690400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |