Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 342 5e-89 seq8 123 2e-23 seq2 109 5e-19 >seq7 Length=7914316 Score = 342 bits (378), Expect = 5e-89 Identities = 647/943 (69%), Gaps = 16/943 (2%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || |||| | ||| |||||| Sbjct 1958629 TTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGC 1958688 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| | || ||||||||||| | || |||| ||||| | | ||| ||| ||| Sbjct 1958689 TCCATCCAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTGGCCGAGGGCGAGGAGG 1958748 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | |||||| |||||||||||||| || | |||| | ||| | || | || Sbjct 1958749 AGGCGGTCGGCGACGAACTCGATGTACTGGGCCATGAGGGCCTGATTCATGCCGACGAGC 1958808 Query 132784 -CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 |||| || || || ||| || ||| ||||||| |||| ||||||| |||||| Sbjct 1958809 GCGCAGGGG-AGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGACGGCGTCGGCGACGAT 1958867 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA--ACATCAAGCAAGCA 132900 | | | ||| | || || ||| | | | | || | | | ||| || Sbjct 1958868 GGCGCGGAGGCGGTCGTCGGGGAGC--TTGGAGCGGAGGAGGGAGTAGAGGAGGCAGGCG 1958925 Query 132901 AAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 |||||||| || | ||||||||| | ||| ||||| |||||| ||| || | ||||||| Sbjct 1958926 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGC 1958985 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 ||||||||||| || |||||||| || |||||| ||| ||||| || ||||||| |||| Sbjct 1958986 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCC 1959045 Query 133021 TCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAG 133080 |||||| ||||| || || ||||||||| |||| || || | | |||||||| Sbjct 1959046 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA---GGACTCGGAGGAGTCGATCCAG 1959102 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 || || ||||| |||||||| ||||| || | || || | |||| || | Sbjct 1959103 CGGAGGGCCCAGTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCGCGGAAGAGG 1959162 Query 133141 CGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAG 133200 ||| || | || ||| | |||||| || | |||| ||||| || ||| Sbjct 1959163 CGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTCGGAG 1959222 Query 133201 TGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACT 133260 || | |||||| |||||||| || |||||||| ||| || |||||| | ||||| || Sbjct 1959223 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACC 1959282 Query 133261 TCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAG 133320 || | ||| || | |||| || ||| |||||||||||| ||| ||||| ||| Sbjct 1959283 TCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCCGCGAAGAAG 1959342 Query 133321 GCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG---CGCTCCCAGTCGCGC 133377 || || ||||| ||||||| |||||||||| | || | | | ||||||||| || Sbjct 1959343 GCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTGCTCCCAGTGCCGG 1959402 Query 133378 GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 ||| | ||| |||||||||||||| | ||||| || |||||||| || || |||||| Sbjct 1959403 AGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTCCGCCTTCTTGTAC 1959462 Query 133438 ATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGC 133497 || ||| || | || || || || || || |||||| |||||| | | Sbjct 1959463 ATCTCCCAGATCTGCGGGTACCTGATCGGGAACATGCAGAACCGGTCGGGGTTCGCCGCC 1959522 Query 133498 AACAGCGGCTCCGCTTGGGGGTCGAACGGCTTC-TCGCCGTCG 133539 | ||| |||||| || || ||| ||||| || |||||| || Sbjct 1959523 AGCAGGGGCTCCTCT--GGCATCG-ACGGCATCTTCGCCGGCG 1959562 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || ||||| |||| || ||| | | Sbjct 4181103 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 4181162 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 |||| | | | | || | || |||| ||| | ||||| || ||||||| |||| Sbjct 4181163 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGAT-CCCGCCGGACCA 4181221 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||||||||| | ||| || || ||||| || |||| | | || ||| ||||||||| Sbjct 4181222 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAA 4181281 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||||||| || | ||||| || Sbjct 4181282 TATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCG 4181317 >seq8 Length=7641483 Score = 123 bits (136), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || |||||||| || || |||||| |||| || ||| | | Sbjct 6352119 ATGCAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCY 6352060 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || | ||||| Sbjct 6352059 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCA 6352001 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | ||| || || ||||| || |||| || ||||| |||||||| Sbjct 6352000 GCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAA 6351941 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| ||||| | ||||| || Sbjct 6351940 CATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCG 6351905 >seq2 Length=11374105 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || ||||| |||| || ||| | | Sbjct 483865 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 483806 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 |||| | | | | || | || |||| ||| | ||||| || ||||||| |||| Sbjct 483805 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGAT-CCCGCCGGACCA 483747 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||||||||| | ||| || || ||||| || |||| | | || ||| ||||||||| Sbjct 483746 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAA 483687 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||||||| || | ||||| || Sbjct 483686 TATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCG 483651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172674956800