Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8 105 5e-17 seq5 86.0 5e-11 >seq8 Length=7641483 Score = 105 bits (116), Expect = 5e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || | ||| ||||| | | |||||||||||| ||||||||||| || | | ||| Sbjct 7582218 TTGTTGTTAAGCCCATAAGAGAGAGCAGCAGCAGTGGGTTCATTAATGATACGCTGCACA 7582159 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | ||| || | |||||| || |||||||| || || |||||||| | || || ||||| Sbjct 7582158 TCAAGCCCCGAAATTCTCCCCGCATCTTTTGTAGCCTGTCTTTGCGCGTCATTGAAATAA 7582099 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || ||||| || | || || | | || ||||||| |||||| || |||| | Sbjct 7582098 GCTGGAACTGTGACCACTGCTTTCGAAACACTCTTACCAAGATAAGCCTCGGCAGTTTCT 7582039 Query 518345 TTCATTTTACTTAAAA 518360 |||||||| | |||| Sbjct 7582038 TTCATTTTTGTCAAAA 7582023 >seq5 Length=8147712 Score = 86.0 bits (94), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || || || ||||| ||||| | || | ||||| ||||| || || ||| Sbjct 7786761 CAAAGACGGTGTTCGTCGGATTCATTGCCACCTGGTTCTTGGCGGCATCACCGATGAGAC 7786702 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | || || || || || | ||||| |||||||| || || || || ||||||||||| | Sbjct 7786701 GCTCGGTGTCGGTGAACGCCACATAGGATGGAGTCGTCCGGTTCCCCTGATCATTCGCGA 7786642 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || |||||| | | | ||||| || || ||||| Sbjct 7786641 TGATCTCAACTCTGTCGTGCTGCCAGACCCCCACACA 7786605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821407534120