Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq8 105 5e-17
seq5 86.0 5e-11
>seq8
Length=7641483
Score = 105 bits (116), Expect = 5e-17
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || | ||| ||||| | | |||||||||||| ||||||||||| || | | |||
Sbjct 7582218 TTGTTGTTAAGCCCATAAGAGAGAGCAGCAGCAGTGGGTTCATTAATGATACGCTGCACA 7582159
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
| ||| || | |||||| || |||||||| || || |||||||| | || || |||||
Sbjct 7582158 TCAAGCCCCGAAATTCTCCCCGCATCTTTTGTAGCCTGTCTTTGCGCGTCATTGAAATAA 7582099
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344
|| ||||| || | || || | | || ||||||| |||||| || |||| |
Sbjct 7582098 GCTGGAACTGTGACCACTGCTTTCGAAACACTCTTACCAAGATAAGCCTCGGCAGTTTCT 7582039
Query 518345 TTCATTTTACTTAAAA 518360
|||||||| | ||||
Sbjct 7582038 TTCATTTTTGTCAAAA 7582023
>seq5
Length=8147712
Score = 86.0 bits (94), Expect = 5e-11
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||| | || || || ||||| ||||| | || | ||||| ||||| || || |||
Sbjct 7786761 CAAAGACGGTGTTCGTCGGATTCATTGCCACCTGGTTCTTGGCGGCATCACCGATGAGAC 7786702
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
| || || || || || | ||||| |||||||| || || || || ||||||||||| |
Sbjct 7786701 GCTCGGTGTCGGTGAACGCCACATAGGATGGAGTCGTCCGGTTCCCCTGATCATTCGCGA 7786642
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679
| || |||||| | | | ||||| || || |||||
Sbjct 7786641 TGATCTCAACTCTGTCGTGCTGCCAGACCCCCACACA 7786605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780821407534120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |