Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 145 9e-30 seq3 116 5e-21 seq18 96.9 4e-15 seq8 82.4 9e-11 >seq7 Length=7914316 Score = 145 bits (160), Expect = 9e-30 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 1958934 >seq3 Length=8976907 Score = 116 bits (128), Expect = 5e-21 Identities = 235/340 (69%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| ||||| || | | || || ||||| || || | || || || | | ||||| Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTTCAAA 5069911 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||||||||||| ||| || || | ||||| || | |||||||||| | | | Sbjct 5069910 ACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATTCCC--CCCT 5069853 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| | || ||||||||||| ||||||| || ||||| || Sbjct 5069852 CCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATACAC 5069793 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || ||| || ||| |||| ||||| || || || |||| || || || || Sbjct 5069792 GGAGCATTCTCTTTAGC--CTTCTTGAAGAGGTCACG--AACCCTTGAAGCTCCTACTCC 5069737 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| || || | | | ||| || | || |||||||||| | |||| Sbjct 5069736 AACAAACATCTCTACGAATTCAGACCCTGAA-ATCGAGAAGAAGGGGACACCTGCCTCAC 5069678 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||||||||| ||| || || ||||| || || || || Sbjct 5069677 CGGCAATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638 >seq18 Length=4131207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/296 (68%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-G 16033 || || ||||||||||| | |||||||| || || ||||||| || || ||| | | Sbjct 1496346 AAGCCGTCCATCTCTGTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCG 1496405 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | || || | || ||| |||| ||||| || ||||| || |||||||||||||| Sbjct 1496406 CCGAGCCCC-GCTCCTCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 1496464 Query 16094 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || ||| || || | || ||||| |||| || || || ||||||| Sbjct 1496465 GGGGGCCTTGGACTTGGCCTTC----TCGAAGAGGTCCCTGACCCGGGAAGCTCCCACAC 1496520 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | || || | |||||| || | | ||||| || || |||||| || | || | Sbjct 1496521 CGACGAAGAGCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGC 1496580 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 16265 | || | ||| ||||| || || ||||| ||||| || || |||| | |||||| Sbjct 1496581 CGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCGTGCCGGGAGGACCCACCAGGAGG 1496636 >seq8 Length=7641483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 188/279 (67%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || || |||||||| |||| ||||||||| || || || |||| || || ||| | || Sbjct 1564910 AAGCCGTCCATCTCGGTCAGAAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTCCC--GC 1564853 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | || || | || ||| | || ||||| || |||||||| ||||||||||||| Sbjct 1564852 CGCCGAGTCCCGCTCCTCGCTGCCTCCCGACGGCGTCGATCTCATCGATGAAGACGATGC 1564793 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || | ||||| || || || || || |||| || | | || ||||| || Sbjct 1564792 AGGG--GGCCTTCGCCTTCGCCTTCTCGAACAGGTCCCTCACTCTCGAAGCTCCCACGCC 1564735 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 || || | |||||| || | | |||| || || |||||| || | ||| || Sbjct 1564734 GACGAAAAGCTCCACGAACTCGGAAGCGGCGCAGGAGAAGAAGGGCACGCCGGCTTCTCC 1564675 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | || ||||| || || ||||| || || || || Sbjct 1564674 GGCGACTGCGCGGGCCAGCAGCGTCTTCCCGGTGCCGGG 1564636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742244814400