Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq7 145 9e-30
seq3 116 5e-21
seq18 96.9 4e-15
seq8 82.4 9e-11
>seq7
Length=7914316
Score = 145 bits (160), Expect = 9e-30
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || |
Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||||||||||| || |||||||| || ||| ||||||||||
Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||| ||||| || |||||||| ||||||
Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 1958934
>seq3
Length=8976907
Score = 116 bits (128), Expect = 5e-21
Identities = 235/340 (69%), Gaps = 14/340 (4%)
Strand=Plus/Minus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976
||| ||||| || | | || || ||||| || || | || || || | | |||||
Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTTCAAA 5069911
Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036
||||||||||||||||| ||| || || | ||||| || | |||||||||| | | |
Sbjct 5069910 ACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATTCCC--CCCT 5069853
Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
| | |||| | | ||| | || ||||||||||| ||||||| || ||||| ||
Sbjct 5069852 CCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATACAC 5069793
Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150
|| ||| || ||| |||| ||||| || || || |||| || || || ||
Sbjct 5069792 GGAGCATTCTCTTTAGC--CTTCTTGAAGAGGTCACG--AACCCTTGAAGCTCCTACTCC 5069737
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209
|||||||||||| || || | | | ||| || | || |||||||||| | ||||
Sbjct 5069736 AACAAACATCTCTACGAATTCAGACCCTGAA-ATCGAGAAGAAGGGGACACCTGCCTCAC 5069678
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| ||||||||| ||| || || ||||| || || || ||
Sbjct 5069677 CGGCAATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638
>seq18
Length=4131207
Score = 96.9 bits (106), Expect = 4e-15
Identities = 201/296 (68%), Gaps = 10/296 (3%)
Strand=Plus/Plus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-G 16033
|| || ||||||||||| | |||||||| || || ||||||| || || ||| | |
Sbjct 1496346 AAGCCGTCCATCTCTGTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCG 1496405
Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093
| | | || || | || ||| |||| ||||| || ||||| || ||||||||||||||
Sbjct 1496406 CCGAGCCCC-GCTCCTCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 1496464
Query 16094 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149
|| ||| || || | || ||||| |||| || || || |||||||
Sbjct 1496465 GGGGGCCTTGGACTTGGCCTTC----TCGAAGAGGTCCCTGACCCGGGAAGCTCCCACAC 1496520
Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209
| || || | |||||| || | | ||||| || || |||||| || | || |
Sbjct 1496521 CGACGAAGAGCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGC 1496580
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 16265
| || | ||| ||||| || || ||||| ||||| || || |||| | ||||||
Sbjct 1496581 CGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCGTGCCGGGAGGACCCACCAGGAGG 1496636
>seq8
Length=7641483
Score = 82.4 bits (90), Expect = 9e-11
Identities = 188/279 (67%), Gaps = 8/279 (3%)
Strand=Plus/Minus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| || |||||||| |||| ||||||||| || || || |||| || || ||| | ||
Sbjct 1564910 AAGCCGTCCATCTCGGTCAGAAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTCCC--GC 1564853
Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
| | || || | || ||| | || ||||| || |||||||| |||||||||||||
Sbjct 1564852 CGCCGAGTCCCGCTCCTCGCTGCCTCCCGACGGCGTCGATCTCATCGATGAAGACGATGC 1564793
Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
| || | ||||| || || || || || |||| || | | || ||||| ||
Sbjct 1564792 AGGG--GGCCTTCGCCTTCGCCTTCTCGAACAGGTCCCTCACTCTCGAAGCTCCCACGCC 1564735
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210
|| || | |||||| || | | |||| || || |||||| || | ||| ||
Sbjct 1564734 GACGAAAAGCTCCACGAACTCGGAAGCGGCGCAGGAGAAGAAGGGCACGCCGGCTTCTCC 1564675
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| | || ||||| || || ||||| || || || ||
Sbjct 1564674 GGCGACTGCGCGGGCCAGCAGCGTCTTCCCGGTGCCGGG 1564636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742244814400
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