Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq18 138 1e-27
seq7 129 7e-25
>seq18
Length=4131207
Score = 138 bits (152), Expect = 1e-27
Identities = 315/469 (67%), Gaps = 4/469 (1%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| ||||| | ||| || | || || || |||||||| |||| ||||| || ||
Sbjct 1496256 CGGTCGAATCTACCAGGCCTCAGAAGGGCGGAATCAAGAACATCGGGCCGGTTGGTCGCC 1496315
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| | ||| | | ||| | | | ||| |||||||| |||||||| |||||||||
Sbjct 1496316 GCGAGGACGATGACGCCGCTGTTCCCGGAGAAGCCGTCCATCTCTGTGAGGAGCTGGTTG 1496375
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAG-GGCATACCACCTGCCGAACGCTTCTTACCGAC 11681
|| |||||||| | ||| ||||| | || | | || || |||| | | |||||
Sbjct 1496376 ATGGTCTGTTCCCTCTCGTCGTTCCCGCCGCCGAGC-CCCGCTCCTCGCTGCCTTCCGAC 1496434
Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTGTTCGAAAA 11740
||||| ||||| |||||||| ||||| || || |||| || | |||| ||||| |
Sbjct 1496435 GGCGTCGATCTCGTCGATGAAGACGATGCAGGGGGCCTTGG-ACTTGGCCTTCTCGAAGA 1496493
Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800
| || | || || ||||| ||||| ||||| | ||| ||||| | | ||| | |
Sbjct 1496494 GGTCCCTGACCCGGGAAGCTCCCACACCGACGAAGAGCTCCACGAACTCGGAGGCGGCGC 1496553
Query 11801 ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCG 11860
| | |||||| || | ||| || |||| ||| || || || || ||||| ||||
Sbjct 1496554 AGGAGAAGAAGGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCG 1496613
Query 11861 TACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGC 11920
| || || | ||| | || ||| ||| ||||||||| || || | |||
Sbjct 1496614 TGCCGGGAGGACCCACCAGGAGGCAGCCCTTGGGGATCTTCGCCCCCAGCGCGGTGTACT 1496673
Query 11921 GCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
|| || ||||| || ||||| || | ||||| || ||| ||||||
Sbjct 1496674 TGTCCGGGTTCTTCAGAAAGTCAACCACCTCCTGGAGCTCCAGCTTGGC 1496722
>seq7
Length=7914316
Score = 129 bits (142), Expect = 7e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || || |||||||| ||
Sbjct 1958935 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 1958994
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| |||||||| || || || || || |||||||||||||| || |||
Sbjct 1958995 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCAG 1959054
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686
||||| |||| || ||||| || || | ||| || ||||| ||| ||| |||||
Sbjct 1959055 GCGAAGGCGACGAGGCGCTCGGCGAAGGACTCG-GAGGAGTCGATCCAGCGGAGGGCCCA 1959113
Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGT 119716
|| |||||| || | | ||||||||| ||
Sbjct 1959114 GTCGGCCTTGCGGGCCACGCAGGGGACGGT 1959143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975852756000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |