Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18 138 1e-27 seq7 129 7e-25 >seq18 Length=4131207 Score = 138 bits (152), Expect = 1e-27 Identities = 315/469 (67%), Gaps = 4/469 (1%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| | ||| || | || || || |||||||| |||| ||||| || || Sbjct 1496256 CGGTCGAATCTACCAGGCCTCAGAAGGGCGGAATCAAGAACATCGGGCCGGTTGGTCGCC 1496315 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | ||| | | ||| | | | ||| |||||||| |||||||| ||||||||| Sbjct 1496316 GCGAGGACGATGACGCCGCTGTTCCCGGAGAAGCCGTCCATCTCTGTGAGGAGCTGGTTG 1496375 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAG-GGCATACCACCTGCCGAACGCTTCTTACCGAC 11681 || |||||||| | ||| ||||| | || | | || || |||| | | ||||| Sbjct 1496376 ATGGTCTGTTCCCTCTCGTCGTTCCCGCCGCCGAGC-CCCGCTCCTCGCTGCCTTCCGAC 1496434 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTGTTCGAAAA 11740 ||||| ||||| |||||||| ||||| || || |||| || | |||| ||||| | Sbjct 1496435 GGCGTCGATCTCGTCGATGAAGACGATGCAGGGGGCCTTGG-ACTTGGCCTTCTCGAAGA 1496493 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800 | || | || || ||||| ||||| ||||| | ||| ||||| | | ||| | | Sbjct 1496494 GGTCCCTGACCCGGGAAGCTCCCACACCGACGAAGAGCTCCACGAACTCGGAGGCGGCGC 1496553 Query 11801 ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCG 11860 | | |||||| || | ||| || |||| ||| || || || || ||||| |||| Sbjct 1496554 AGGAGAAGAAGGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCG 1496613 Query 11861 TACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGC 11920 | || || | ||| | || ||| ||| ||||||||| || || | ||| Sbjct 1496614 TGCCGGGAGGACCCACCAGGAGGCAGCCCTTGGGGATCTTCGCCCCCAGCGCGGTGTACT 1496673 Query 11921 GCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || ||||| || ||||| || | ||||| || ||| |||||| Sbjct 1496674 TGTCCGGGTTCTTCAGAAAGTCAACCACCTCCTGGAGCTCCAGCTTGGC 1496722 >seq7 Length=7914316 Score = 129 bits (142), Expect = 7e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 1958935 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 1958994 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || || |||||||||||||| || ||| Sbjct 1958995 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCAG 1959054 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 1959055 GCGAAGGCGACGAGGCGCTCGGCGAAGGACTCG-GAGGAGTCGATCCAGCGGAGGGCCCA 1959113 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 || |||||| || | | ||||||||| || Sbjct 1959114 GTCGGCCTTGCGGGCCACGCAGGGGACGGT 1959143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975852756000