Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 seq7 122 1e-22 seq18 87.8 2e-12 seq8 82.4 9e-11 >seq3 Length=8976907 Score = 132 bits (146), Expect = 6e-26 Identities = 236/338 (70%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9281 ||| ||||| || | | || || ||||| || || | || || |||| | || || Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTT--CA 5069913 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||||||||||| |||||| || | ||||| || | |||||||||| | | Sbjct 5069912 AAACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATTCCC--CC 5069855 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | |||| | | ||| | || ||||||||||| ||||||| || || |||| Sbjct 5069854 CTCCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATAC 5069795 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || ||| || || | | ||||| || ||||||||| || || || |||| Sbjct 5069794 ACGGAGCATTCTCTTTAGCCTTCTTGAAGAGGTCACGAACCCTTGAAGCTCCTACTCCAA 5069735 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| || || | | | ||| || | || |||||||||| | ||||| Sbjct 5069734 CAAACATCTCTACGAATTCAGACCCTGAA-ATCGAGAAGAAGGGGACACCTGCCTCACCG 5069676 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||||||| ||| || || ||||| || || || || Sbjct 5069675 GCAATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638 >seq7 Length=7914316 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | ||||||||||||||||| Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083 >seq18 Length=4131207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 215/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TGG 9340 || || ||||||||||| | || ||||| || || ||||||| || || ||| | | Sbjct 1496346 AAGCCGTCCATCTCTGTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCG 1496405 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | || || | || ||| |||| ||||| || ||||| || |||||||| || || Sbjct 1496406 CCGAGC-CCCGCTCCTCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 1496464 Query 9401 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || ||| || ||| | || ||||| || | |||| || ||||||| Sbjct 1496465 GGGGGCCTTGGACTT----GGCCTTCTCGAAGAGGTCCCTGACCCGGGAAGCTCCCACAC 1496520 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | || || | |||||| || | | ||||| || || |||||| || | || | Sbjct 1496521 CGACGAAGAGCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGC 1496580 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576 | || | ||| ||||| || || ||||| ||||| || || |||| | |||| |||| Sbjct 1496581 CGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCGTGCCGGGAGGACCCACCAGGA-GGCAG 1496639 Query 9577 CCCGT-GGAATCTTGGCGCC 9595 ||| | || ||||| || || Sbjct 1496640 CCCTTGGGGATCTTCGCCCC 1496659 >seq8 Length=7641483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 6966 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7025 || |||||| |||| ||||| ||||| | | | ||||| || || || ||| | | Sbjct 1233937 ACGCCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTGGCCGCCCACTGGTACACC 1233878 Query 7026 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7085 || |||||||| | ||||| || || || ||| ||| ||||||||||||||||| Sbjct 1233877 GTCAACTACCGCGAAGCCTACGGCCTCTTCGCTTGCAACGGCATCCTCTTCAACCATGAG 1233818 Query 7086 TCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGG 7132 || || | || || | | |||| ||||| |||||| ||| |||| Sbjct 1233817 TCGCCCCGCCGCGGCGAAAACTTCGTCACTCGGAAGATCACC-AGGG 1233772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980652504800