Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 6e-26
seq7 122 1e-22
seq18 87.8 2e-12
seq8 82.4 9e-11
>seq3
Length=8976907
Score = 132 bits (146), Expect = 6e-26
Identities = 236/338 (70%), Gaps = 10/338 (3%)
Strand=Plus/Minus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9281
||| ||||| || | | || || ||||| || || | || || |||| | || ||
Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTT--CA 5069913
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
||||||||||||||||||| |||||| || | ||||| || | |||||||||| | |
Sbjct 5069912 AAACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATTCCC--CC 5069855
Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
| | | |||| | | ||| | || ||||||||||| ||||||| || || ||||
Sbjct 5069854 CTCCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATAC 5069795
Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459
| || ||| || || | | ||||| || ||||||||| || || || ||||
Sbjct 5069794 ACGGAGCATTCTCTTTAGCCTTCTTGAAGAGGTCACGAACCCTTGAAGCTCCTACTCCAA 5069735
Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518
|||||||||| || || | | | ||| || | || |||||||||| | |||||
Sbjct 5069734 CAAACATCTCTACGAATTCAGACCCTGAA-ATCGAGAAGAAGGGGACACCTGCCTCACCG 5069676
Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||||||||| ||| || || ||||| || || || ||
Sbjct 5069675 GCAATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638
>seq7
Length=7914316
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| ||||| || ||||| || || || || |||||| ||||| |||||||| ||
Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || |||||||| |||||||||||||| ||||| || ||
Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434
|| || || | |||||||||||||||||
Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083
>seq18
Length=4131207
Score = 87.8 bits (96), Expect = 2e-12
Identities = 215/320 (67%), Gaps = 12/320 (4%)
Strand=Plus/Plus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TGG 9340
|| || ||||||||||| | || ||||| || || ||||||| || || ||| | |
Sbjct 1496346 AAGCCGTCCATCTCTGTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCG 1496405
Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
| | | || || | || ||| |||| ||||| || ||||| || |||||||| || ||
Sbjct 1496406 CCGAGC-CCCGCTCCTCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 1496464
Query 9401 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456
|| ||| || ||| | || ||||| || | |||| || |||||||
Sbjct 1496465 GGGGGCCTTGGACTT----GGCCTTCTCGAAGAGGTCCCTGACCCGGGAAGCTCCCACAC 1496520
Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516
| || || | |||||| || | | ||||| || || |||||| || | || |
Sbjct 1496521 CGACGAAGAGCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGC 1496580
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576
| || | ||| ||||| || || ||||| ||||| || || |||| | |||| ||||
Sbjct 1496581 CGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCGTGCCGGGAGGACCCACCAGGA-GGCAG 1496639
Query 9577 CCCGT-GGAATCTTGGCGCC 9595
||| | || ||||| || ||
Sbjct 1496640 CCCTTGGGGATCTTCGCCCC 1496659
>seq8
Length=7641483
Score = 82.4 bits (90), Expect = 9e-11
Identities = 119/167 (71%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 6966 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7025
|| |||||| |||| ||||| ||||| | | | ||||| || || || ||| | |
Sbjct 1233937 ACGCCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTGGCCGCCCACTGGTACACC 1233878
Query 7026 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7085
|| |||||||| | ||||| || || || ||| ||| |||||||||||||||||
Sbjct 1233877 GTCAACTACCGCGAAGCCTACGGCCTCTTCGCTTGCAACGGCATCCTCTTCAACCATGAG 1233818
Query 7086 TCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGG 7132
|| || | || || | | |||| ||||| |||||| ||| ||||
Sbjct 1233817 TCGCCCCGCCGCGGCGAAAACTTCGTCACTCGGAAGATCACC-AGGG 1233772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980652504800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |