Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq8 111 2e-19 seq3 102 1e-16 seq19 86.0 8e-12 >seq2 Length=11374105 Score = 131 bits (144), Expect = 2e-25 Identities = 133/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 180074 CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-G 180132 |||||||||||||||||||||||| || || ||||||||||| || ||||| ||| | Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTG 4329664 Query 180133 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 180192 | |||||||| ||||| || || || || ||||||| ||| | |||| ||| | |||| Sbjct 4329665 TTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 4329724 Query 180193 AAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACT 180243 |||| || ||||| | ||||| || || |||||||| || ||||||| Sbjct 4329725 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 180546 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 180605 || ||||| | ||| | || | || || ||||| |||||||| |||| |||| | || Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 180606 AACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAAC 180665 ||||| ||||| |||| || ||||||| | || | |||| | || | ||||| Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 180666 CGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725 | ||| ||| ||||||||||| ||||| || ||||||||| |||||||||| || ||| Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 Query 180726 CTGGCAGCTGCTGA 180739 | || || | ||| Sbjct 525247 TTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 102 bits (112), Expect = 1e-16 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 179991 GAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT---TGTCGTC 180047 |||||||||| |||| ||||| | || || || ||||||| | | || ||| | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 180048 TTC--CACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATC 180105 ||| |||||| | |||| | | |||||||| |||||||||||||||| || | Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 180106 GCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164 | ||||||||| || ||||| ||| || |||||||| ||||| || || || || || Sbjct 715853 GTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACT 715911 Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 180196 ||||| || | |||| | | | |||||||| Sbjct 715912 GCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 180634 GTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 180693 |||| | ||||||||||| || | ||||||| ||| || |||||||||||||||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 180694 ACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725 | || |||||||||||||||||| | || ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGAC 3082543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610396647400800