Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq2 131 2e-25
seq8 111 2e-19
seq3 102 1e-16
seq19 86.0 8e-12
>seq2
Length=11374105
Score = 131 bits (144), Expect = 2e-25
Identities = 133/171 (78%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 180074 CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-G 180132
|||||||||||||||||||||||| || || ||||||||||| || ||||| ||| |
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTG 4329664
Query 180133 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 180192
| |||||||| ||||| || || || || ||||||| ||| | |||| ||| | ||||
Sbjct 4329665 TTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 4329724
Query 180193 AAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACT 180243
|||| || ||||| | ||||| || || |||||||| || |||||||
Sbjct 4329725 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 180546 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 180605
|| ||||| | ||| | || | || || ||||| |||||||| |||| |||| | ||
Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126
Query 180606 AACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAAC 180665
||||| ||||| |||| || ||||||| | || | |||| | || | |||||
Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186
Query 180666 CGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725
| ||| ||| ||||||||||| ||||| || ||||||||| |||||||||| || |||
Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246
Query 180726 CTGGCAGCTGCTGA 180739
| || || | |||
Sbjct 525247 TTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 102 bits (112), Expect = 1e-16
Identities = 152/212 (72%), Gaps = 7/212 (3%)
Strand=Plus/Plus
Query 179991 GAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT---TGTCGTC 180047
|||||||||| |||| ||||| | || || || ||||||| | | || ||| |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 180048 TTC--CACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATC 180105
||| |||||| | |||| | | |||||||| |||||||||||||||| || |
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852
Query 180106 GCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164
| ||||||||| || ||||| ||| || |||||||| ||||| || || || || ||
Sbjct 715853 GTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACT 715911
Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 180196
||||| || | |||| | | | ||||||||
Sbjct 715912 GCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq19
Length=3929835
Score = 86.0 bits (94), Expect = 8e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 180634 GTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 180693
|||| | ||||||||||| || | ||||||| ||| || ||||||||||||||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 180694 ACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725
| || |||||||||||||||||| | || |||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGAC 3082543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610396647400800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |