Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 seq3 116 4e-21 seq8 107 2e-18 seq19 87.8 2e-12 >seq2 Length=11374105 Score = 129 bits (142), Expect = 7e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 ||||||||||||||||||||||| || |||| | |||||||||||||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231 || || || || || || ||||| || | || || ||| || |||| ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 164232 GGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACT 164280 || || ||||| | ||||| || || || ||||| || ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 116 bits (128), Expect = 4e-21 Identities = 156/213 (73%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 164028 GAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACT---TGTCGTC 164084 |||||||||| ||||| | ||| | ||||| || ||||||| | | || ||| | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 164085 TTC--CACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTGTCTTA 164140 ||| |||||| | | ||| | || ||| ||||||| ||||||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 164141 CCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATC 164200 |||||| ||||||| |||||||||| |||||| || || || || || ||||| || | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910 Query 164201 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGG 164233 || || || || |||| | | | |||||||| Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq8 Length=7641483 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 164610 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 164669 || ||||| |||||||| |||| |||| | || ||||| ||||| | || || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 164670 CGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 164729 ||||| | || | |||| | || | |||||| ||| ||| ||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 164730 CACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 || || ||||| ||| ||||||||||||| || | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq19 Length=3929835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 164671 GTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 164730 |||| | ||||||||||| || || ||||||| ||| || |||||||||||||||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 164731 ACGAGCGTAACGCTCACAACTTCCCTCTGGA 164761 | || ||||| |||||||||||| |||| || Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGA 3082542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924660768800