Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 7e-25
seq3 116 4e-21
seq8 107 2e-18
seq19 87.8 2e-12
>seq2
Length=11374105
Score = 129 bits (142), Expect = 7e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171
||||||||||||||||||||||| || |||| | |||||||||||||||||| ||||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231
|| || || || || || ||||| || | || || ||| || |||| ||| | ||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 164232 GGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACT 164280
|| || ||||| | ||||| || || || ||||| || |||||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq3
Length=8976907
Score = 116 bits (128), Expect = 4e-21
Identities = 156/213 (73%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 164028 GAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACT---TGTCGTC 164084
|||||||||| ||||| | ||| | ||||| || ||||||| | | || ||| |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 164085 TTC--CACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTGTCTTA 164140
||| |||||| | | ||| | || ||| ||||||| ||||||||||||||| ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850
Query 164141 CCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATC 164200
|||||| ||||||| |||||||||| |||||| || || || || || ||||| || |
Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910
Query 164201 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGG 164233
|| || || || |||| | | | ||||||||
Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq8
Length=7641483
Score = 107 bits (118), Expect = 2e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 164610 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 164669
|| ||||| |||||||| |||| |||| | || ||||| ||||| | || || | ||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 164670 CGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 164729
||||| | || | |||| | || | |||||| ||| ||| ||||||||||| |||
Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213
Query 164730 CACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776
|| || ||||| ||| ||||||||||||| || | ||||| | |||
Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq19
Length=3929835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 164671 GTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 164730
|||| | ||||||||||| || || ||||||| ||| || ||||||||||||||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 164731 ACGAGCGTAACGCTCACAACTTCCCTCTGGA 164761
| || ||||| |||||||||||| |||| ||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGA 3082542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556924660768800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |