Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 1e-22
seq6 114 1e-20
seq19 87.8 2e-12
>seq2
Length=11374105
Score = 122 bits (134), Expect = 1e-22
Identities = 129/170 (76%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 168817 CTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 168876
|||||||||| | |||||||| || | | | | |||||| | |||||||| |||
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665
Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936
||| |||||||| || ||| | || || ||| || ||| | | ||||| |||||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACT 168986
|| ||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 114 bits (126), Expect = 1e-20
Identities = 120/157 (76%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966
||| || ||| | | ||||| ||||||| || ||| ||||||||| || |||||||
Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623
Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026
||||||||| |||||||||||||| | |||||| | |||| | |||| ||||||||
Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCA 2591680
Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063
|| ||||| ||| ||| ||||| ||| | ||| ||
Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq19
Length=3929835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447
|| |||| ||| | | ||| | || ||||||||||||||||| |||||||| |||||
Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522
Query 169448 GCTCACAACTTCCCACTAGACTTAGC 169473
|||||||||||| | |||||||||||
Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGC 3082548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564441458889600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |