Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq6 114 1e-20 seq19 87.8 2e-12 >seq2 Length=11374105 Score = 122 bits (134), Expect = 1e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 168817 CTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 168876 |||||||||| | |||||||| || | | | | |||||| | |||||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936 ||| |||||||| || ||| | || || ||| || ||| | | ||||| ||||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACT 168986 || ||| ||||||||||||||||||||||||||||| || ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 114 bits (126), Expect = 1e-20 Identities = 120/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| || ||| | | ||||| ||||||| || ||| ||||||||| || ||||||| Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||||||||| |||||||||||||| | |||||| | |||| | |||| |||||||| Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCA 2591680 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063 || ||||| ||| ||| ||||| ||| | ||| || Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq19 Length=3929835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 169448 GCTCACAACTTCCCACTAGACTTAGC 169473 |||||||||||| | ||||||||||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGC 3082548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564441458889600