Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq8 93.3 5e-14 seq6 82.4 9e-11 >seq2 Length=11374105 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 162711 CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-G 162769 ||||||||| ||||| |||||||| || |||| | ||||||||||| ||||| ||| | Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTG 4329664 Query 162770 TAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTC 162829 | ||||| || || ||||| ||||| || | || || ||| || |||| ||| | |||| Sbjct 4329665 TTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 4329724 Query 162830 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACT 162880 |||| ||| ||||| | ||||| | || || |||||| ||||||| Sbjct 4329725 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269 || ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 163329 ||||| | || | ||| | || | | |||| ||| | | ||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 163330 CACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGC 163370 || || || |||||| |||||||||| || ||| | || || Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGC 525254 >seq6 Length=8045491 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 162802 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGT 162861 || || ||| || |||| ||| | |||||||| ||| ||||| | || | | || Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 162862 ATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921 || |||||||||||||| ||| |||| ||| | |||| | |||| || ||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681 Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGT 162957 || ||||||||||| || || || ||||| ||| || Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583860604000