Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq6 111 2e-19
seq3 109 6e-19
seq8 100 3e-16
seq7 91.5 2e-13
seq19 89.7 6e-13
>seq2
Length=11374105
Score = 140 bits (154), Expect = 4e-28
Identities = 133/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 167414 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 167473
||| |||||||||||||||||||| || |||| | ||||||||||| ||||| |||
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665
Query 167474 TGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 167533
|||||| || ||||| || || || || ||||||| ||| | |||| ||| | |||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 167534 AGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACT 167583
||| ||| ||||| | |||||||| || || |||||||| |||||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 111 bits (122), Expect = 2e-19
Identities = 118/155 (76%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 167503 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTG 167562
||||||| ||| | |||| ||| | |||||||| ||| ||||| | || |||| |
Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622
Query 167563 GTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 167622
| || |||||||||||||||| ||| |||| ||| | |||| | ||||||| ||||
Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGC 2591679
Query 167623 ACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTC 167657
|||| ||||| ||| | ||||| ||||| ||||||
Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTC 2591714
>seq3
Length=8976907
Score = 109 bits (120), Expect = 6e-19
Identities = 140/192 (73%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 167350 AGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTT---TTC--CACTTCCTGATTGG 167404
||||||| |||||||| ||||||| | | || | ||| ||| |||||| | ||||
Sbjct 715752 AGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTTAMTTGG 715811
Query 167405 CATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTG 167464
| | ||| |||| ||||||||||||||| || |||||| ||||||| ||| ||
Sbjct 715812 TGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCATCCTTG 715871
Query 167465 GATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCC 167524
||| ||||||||| || ||||| || || || || ||||||| || | |||| |
Sbjct 715872 GATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTGATCTACCT 715931
Query 167525 TTTCGGTCAAGG 167536
| | ||||||||
Sbjct 715932 TATTGGTCAAGG 715943
>seq8
Length=7641483
Score = 100 bits (110), Expect = 3e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981
|||||||| |||| |||| | || ||||| || || |||| | | | || ||| |
Sbjct 525103 TTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATT 525162
Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041
|| |||| | || | |||||| |||| ||| ||||||||||| ||||| || |||
Sbjct 525163 AATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGT 525222
Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079
|||||| ||||||||||||| ||| | ||||| | |||
Sbjct 525223 AATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq7
Length=7914316
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 167287 TTCCTTCTTCTAATGCTATTGGTCTTCACTTCT-ATCCCATCTGGGAAGCAGCAACCCTC 167345
||||| ||||| ||||||||| | || || | |||| ||||||||||||||||| |
Sbjct 495579 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTT 495520
Query 167346 GACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGG 167404
|| ||||||| |||||||||||||||| | || | | ||| | |||||| | ||||
Sbjct 495519 GATGAGTGGTAATACAATGGTGGTCCTTACGAAYTAATCGTTCTACACTTCTTACTTGG 495461
>seq19
Length=3929835
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044
|||||||| || | ||||||||||| || ||||||||||||||||| || ||||||
Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522
Query 168045 GCTCACAACTTCCCTCTCGACCTTGCT 168071
|||||||||||| |||| ||| | |||
Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGCT 3082549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560607859848000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |