Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq6 111 2e-19 seq3 109 6e-19 seq8 100 3e-16 seq7 91.5 2e-13 seq19 89.7 6e-13 >seq2 Length=11374105 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 167414 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 167473 ||| |||||||||||||||||||| || |||| | ||||||||||| ||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 167474 TGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 167533 |||||| || ||||| || || || || ||||||| ||| | |||| ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 167534 AGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACT 167583 ||| ||| ||||| | |||||||| || || |||||||| ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 167503 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTG 167562 ||||||| ||| | |||| ||| | |||||||| ||| ||||| | || |||| | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 167563 GTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 167622 | || |||||||||||||||| ||| |||| ||| | |||| | ||||||| |||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGC 2591679 Query 167623 ACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTC 167657 |||| ||||| ||| | ||||| ||||| |||||| Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTC 2591714 >seq3 Length=8976907 Score = 109 bits (120), Expect = 6e-19 Identities = 140/192 (73%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 167350 AGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTT---TTC--CACTTCCTGATTGG 167404 ||||||| |||||||| ||||||| | | || | ||| ||| |||||| | |||| Sbjct 715752 AGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTTAMTTGG 715811 Query 167405 CATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTG 167464 | | ||| |||| ||||||||||||||| || |||||| ||||||| ||| || Sbjct 715812 TGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCATCCTTG 715871 Query 167465 GATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCC 167524 ||| ||||||||| || ||||| || || || || ||||||| || | |||| | Sbjct 715872 GATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTGATCTACCT 715931 Query 167525 TTTCGGTCAAGG 167536 | | |||||||| Sbjct 715932 TATTGGTCAAGG 715943 >seq8 Length=7641483 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||||| |||| |||| | || ||||| || || |||| | | | || ||| | Sbjct 525103 TTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATT 525162 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 || |||| | || | |||||| |||| ||| ||||||||||| ||||| || ||| Sbjct 525163 AATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGT 525222 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 |||||| ||||||||||||| ||| | ||||| | ||| Sbjct 525223 AATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq7 Length=7914316 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 167287 TTCCTTCTTCTAATGCTATTGGTCTTCACTTCT-ATCCCATCTGGGAAGCAGCAACCCTC 167345 ||||| ||||| ||||||||| | || || | |||| ||||||||||||||||| | Sbjct 495579 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTT 495520 Query 167346 GACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGG 167404 || ||||||| |||||||||||||||| | || | | ||| | |||||| | |||| Sbjct 495519 GATGAGTGGTAATACAATGGTGGTCCTTACGAAYTAATCGTTCTACACTTCTTACTTGG 495461 >seq19 Length=3929835 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||| || | ||||||||||| || ||||||||||||||||| || |||||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCT 168071 |||||||||||| |||| ||| | ||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607859848000