Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq8 95.1 2e-14 >seq6 Length=8045491 Score = 105 bits (116), Expect = 1e-17 Identities = 103/132 (78%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| | || | || ||||| ||||| |||||||||| ||| Sbjct 2591589 GGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGAATTTCTGGTACATTCAACTTCATA 2591648 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| ||| || | || |||| | || ||||||||||||||||||||||| || ||| Sbjct 2591649 ATTGTATTCAAGACAGAACACATCCTT---ATGCACCCATTCCACATGTTAGGCGTAGCT 2591705 Query 215855 GGTGTCTTCGGT 215866 ||||| ||| || Sbjct 2591706 GGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTG-G 216177 |||||||| |||||||| |||| |||| | || ||||| || | || ||| ||| | | Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACA-ATCCGAG 525152 Query 216178 TAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAAT 216237 | |||||| || |||| | || | | ||| || |||||||||||||| || Sbjct 525153 TCGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGAT 525212 Query 216238 GCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||| || ||||| ||| |||||||||| ||||||| ||||| | |||| Sbjct 525213 GCATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGAA 525261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745081413729600