Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-24 seq8 125 9e-24 seq19 96.9 4e-15 seq3 96.9 4e-15 seq6 95.1 1e-14 >seq2 Length=11374105 Score = 127 bits (140), Expect = 3e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 182120 CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGT 182179 ||||||||| |||||||||||||| || ||| || ||||||||||| ||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 182180 AGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCA 182239 ||||| || ||||| || || || || ||||||| ||||| |||| ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 182240 AGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACT 182289 ||| || || |||| ||||| || ||||| || || || ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 125 bits (138), Expect = 9e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 182619 ACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 182678 || ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 182679 CGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATG 182738 ||||| |||| | |||| | ||| | | |||| |||| ||||||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 182739 CATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 ||||| ||||| || |||||||||| ||||| | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 182680 GTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGC 182739 |||| ||||||||||||| ||| | | ||||||||| ||||||||||||||||||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 182740 ATGAGCGTAACGCACACAACTTCCCACTAGA 182770 |||| ||||| || ||||||||| | ||||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGA 3082542 >seq3 Length=8976907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 182037 GAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTT--- 182093 ||||| || | ||||| ||||| | || || || ||||||| | | || ||||| Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 182094 TTC--CACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGAACTTTCTT 182148 ||| |||||| | | || | || || |||||||| ||||||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGG--TGTA-GCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849 Query 182149 ACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCAT 182208 ||| | ||||||| ||| ||||| ||| ||||| || ||||| || || || || Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909 Query 182209 CTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGG 182242 ||||||| || || |||| | | | |||||||| Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq6 Length=8045491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 182209 CTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCG 182268 ||||||| ||||| |||| ||| | |||||||| || || |||| || | || | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 182269 GAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGC 182328 |||| || || |||||||||| || | || ||| | | || |||| | ||||||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACATC---CTTATGC 2591679 Query 182329 ATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGT 182366 | || ||||||||||| || ||||| ||||||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695847076000