Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 3e-24
seq8 125 9e-24
seq19 96.9 4e-15
seq3 96.9 4e-15
seq6 95.1 1e-14
>seq2
Length=11374105
Score = 127 bits (140), Expect = 3e-24
Identities = 130/170 (76%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 182120 CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGT 182179
||||||||| |||||||||||||| || ||| || ||||||||||| ||||| |||
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665
Query 182180 AGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCA 182239
||||| || ||||| || || || || ||||||| ||||| |||| ||| | |||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 182240 AGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACT 182289
||| || || |||| ||||| || ||||| || || || |||||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 125 bits (138), Expect = 9e-24
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 182619 ACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 182678
|| ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | ||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 182679 CGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATG 182738
||||| |||| | |||| | ||| | | |||| |||| ||||||||||||||| |||
Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213
Query 182739 CATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785
||||| ||||| || |||||||||| ||||| | ||||| | |||
Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq19
Length=3929835
Score = 96.9 bits (106), Expect = 4e-15
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 182680 GTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGC 182739
|||| ||||||||||||| ||| | | ||||||||| |||||||||||||||||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 182740 ATGAGCGTAACGCACACAACTTCCCACTAGA 182770
|||| ||||| || ||||||||| | |||||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGA 3082542
>seq3
Length=8976907
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/214 (71%), Gaps = 11/214 (5%)
Strand=Plus/Plus
Query 182037 GAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTT--- 182093
||||| || | ||||| ||||| | || || || ||||||| | | || |||||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 182094 TTC--CACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGAACTTTCTT 182148
||| |||||| | | || | || || |||||||| ||||||||||||||| ||
Sbjct 715793 TTCTACACTTCTTAMTTGG--TGTA-GCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849
Query 182149 ACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCAT 182208
||| | ||||||| ||| ||||| ||| ||||| || ||||| || || || ||
Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909
Query 182209 CTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGG 182242
||||||| || || |||| | | | ||||||||
Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq6
Length=8045491
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/158 (73%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 182209 CTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCG 182268
||||||| ||||| |||| ||| | |||||||| || || |||| || | || |
Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622
Query 182269 GAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGC 182328
|||| || || |||||||||| || | || ||| | | || |||| | |||||||
Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACATC---CTTATGC 2591679
Query 182329 ATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGT 182366
| || ||||||||||| || ||||| ||||||||| ||
Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611695847076000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |