Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 seq3 140 4e-28 seq8 122 1e-22 seq11 98.7 1e-15 seq19 89.7 6e-13 seq7 86.0 7e-12 >seq2 Length=11374105 Score = 178 bits (196), Expect = 1e-39 Identities = 145/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 165084 AGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 165143 |||||||||||||||||||||||||||||| || ||| | ||||||||||||||||| Sbjct 4329600 AGCTTGCTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT 4329659 Query 165144 TTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTT 165203 | || |||||| || ||||| || |||||| | || |||||| || |||| ||| | Sbjct 4329660 TGCTGTTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTAT 4329719 Query 165204 CGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACT 165259 |||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| Sbjct 4329720 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 140 bits (154), Expect = 4e-28 Identities = 149/196 (76%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 165022 GATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTC---TTC--CACTTCCTCA 165076 ||| | ||||| ||||| || ||||||||| || | |||| ||| |||||| | Sbjct 715748 GATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTTAM 715807 Query 165077 TCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTC 165136 | ||||||||||||||||||| ||||||||||||||| || ||| || ||||||| || Sbjct 715808 TTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCATC 715867 Query 165137 CTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCT 165196 |||||||| || |||||| || ||||| || |||||| | || ||||| || ||| Sbjct 715868 CTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTGATCT 715927 Query 165197 ATCCTTTCGGTCAAGG 165212 | | | | |||||||| Sbjct 715928 ACCTTATTGGTCAAGG 715943 >seq8 Length=7641483 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 165560 GTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACT 165619 |||| ||||| | |||| | ||| |||| || ||||| |||||||| |||| |||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 165620 TCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGA 165679 | ||||| || || ||||| | || || | || || |||| |||| | | | Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 165680 ACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCG 165739 ||| |||| ||| ||||||||||| |||||||| ||||| ||| |||||||||| || | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 165740 ACCTCGCTGC 165749 || | ||||| Sbjct 525245 ACTTAGCTGC 525254 >seq11 Length=5849386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 165117 TTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGC 165176 || ||| || ||||| |||||||||||| || |||||| || | ||| | | ||| Sbjct 4649182 TTTCCGTCTGGGTATTCGTCCTTGGATTGCTGTTGCATATTCAGCTCATGTAGTAGTTGC 4649123 Query 165177 TGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCT 165236 | || ||||| || |||| ||| |||||||| ||||| ||||||||||||||||| Sbjct 4649122 AACTGCTTTTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCT 4649063 Query 165237 TGGTATCTCTGGTACTTTT 165255 || || |||||| ||||| Sbjct 4649062 AGGAATTTCTGGTGCTTTT 4649044 >seq19 Length=3929835 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| || | ||||||||| || |||||||||||||||||||| ||||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCT 165747 |||||||||||| | || ||| | ||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGCT 3082549 >seq7 Length=7914316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 164992 TTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTAC 165051 || ||||| || |||||||| ||||| | ||||| |||| ||||| |||||||||||| Sbjct 495549 TTTTATCCAATCTGGGAAGCAGCAACTGTTGATGAGTGGTAATACAATGGTGGTCCTTAC 495490 Query 165052 CAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAG 165105 | | | || | |||||| | | |||||||||| |||||||| |||| || Sbjct 495489 GAAYTAATCGTTCTACACTTCTTACTTGGTGTAGCTTTCTACATGGATCGTAAG 495436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660659084800