Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq6 104 3e-17 >seq2 Length=11374105 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 170016 CTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGT 170075 |||||||||| | ||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 170076 AGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCA 170135 |||||||| ||||| || |||| || ||||| ||||| | || ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 170136 GGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACT 170185 ||| ||| || || || ||||||||||| || || ||||| || |||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 104 bits (114), Expect = 3e-17 Identities = 115/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 ||||| ||||| | || ||| | ||||| ||| ||| || || || || ||||||| Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 || || |||||||| |||||||| | |||||| | |||| |||| | ||||||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACATC---CTTATGCAC 2591681 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTC 170259 |||||||| ||| ||| || |||||| | ||| Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTC 2591714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847854288000