Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq8 138 3e-27
seq7 136 9e-27
seq2 136 9e-27
seq16 122 2e-22
seq18 104 5e-17
>seq8
Length=7641483
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || || ||||| || || || |||| || || |||
Sbjct 6351911 ACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTCG 6351970
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || || ||||| ||||| ||
Sbjct 6351971 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGG 6352030
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| ||| ||||| || ||||| | ||||||
Sbjct 6352031 ATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTC 6352090
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 6352091 CCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq7
Length=7914316
Score = 136 bits (150), Expect = 9e-27
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || |||||||| ||||| ||||||||||| || |||
Sbjct 4181311 ACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCG 4181252
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || || || || | ||| ||
Sbjct 4181251 AGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGG 4181192
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || || ||||| ||| || || || || || | ||||||
Sbjct 4181191 ATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTC 4181132
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 4181131 CCCGTCAGGGTCTTCACGAAGATCTGCAT 4181103
>seq2
Length=11374105
Score = 136 bits (150), Expect = 9e-27
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || |||||||| ||||| ||||||||||| || |||
Sbjct 483657 ACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCG 483716
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || || || || | ||| ||
Sbjct 483717 AGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGG 483776
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || || ||||| ||| || || || || || | ||||||
Sbjct 483777 ATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTC 483836
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 483837 CCCGTCAGGGTCTTCACGAAGATCTGCAT 483865
>seq16
Length=4450370
Score = 122 bits (134), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || || || ||||| || || | || || ||
Sbjct 3338512 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCC 3338453
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 3338452 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3338393
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || ||||||||||| ||||| || | || | |||||
Sbjct 3338392 ATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTG 3338333
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || ||||| | |||||
Sbjct 3338332 CCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304
>seq18
Length=4131207
Score = 104 bits (114), Expect = 5e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| ||||| || |||||||| || ||||| || || || ||||| || ||||||||
Sbjct 771095 CTGAGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTG 771154
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| || || || |||||||| || || || || | || || ||||||||||| |||||
Sbjct 771155 CGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGGATGCCC 771214
Query 195040 TCTTTGTCTTGA 195051
|| ||||| |||
Sbjct 771215 TCCTTGTCCTGA 771226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481315695340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |