Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 3e-13 seq18 86.0 4e-12 seq3 82.4 5e-11 >seq16 Length=4450370 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | |||| ||| | ||| || ||||| ||||||||||| | Sbjct 3338530 CCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCG 3338471 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || ||||| || || || || |||||||| | || Sbjct 3338470 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 3338411 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | || || ||| || Sbjct 3338410 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3338351 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| || || || |||||||| || ||||||||||| Sbjct 3338350 TCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq18 Length=4131207 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | |||||| |||| ||||| || || ||||| ||||| ||||| | | Sbjct 771089 CCCCCCCTGAGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCA 771148 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || |||||||| || || |||||||| | || ||||||||| | || Sbjct 771149 AGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGG 771208 Query 34875 ACCCCCTCCTTGTCGCTAATCTTC 34898 | ||||||||||| || ||| || Sbjct 771209 ATGCCCTCCTTGTC-CTGATCATC 771231 >seq3 Length=8976907 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || ||||| || || || | |||||||| | || | ||||||||| Sbjct 8500473 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTG 8500532 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| |||||| | || | || || ||| || || | ||| || Sbjct 8500533 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATA 8500592 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||| ||||||||||| Sbjct 8500593 GTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633520870560