Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 4e-21
seq6 104 3e-17
>seq2
Length=11374105
Score = 116 bits (128), Expect = 4e-21
Identities = 131/174 (75%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 84460 AGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAG 84519
||||||| || || || || || || ||||| |||||||| ||| ||||| || | ||
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 84520 GATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCC 84579
| || | | ||| ||||||| || ||||| || ||||| || || |||||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 84580 ATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA 84633
| ||||||||||| | ||| | |||||||| ||||||||||||| |||||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGT-AGCAA 4329603
>seq6
Length=8045491
Score = 104 bits (114), Expect = 3e-17
Identities = 118/158 (75%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 84383 ACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGC 84442
|| |||||||||||| || || |||||||| || || |||||||||||| ||||| |
Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATG---TGTTCTGT 2591661
Query 84443 CTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502
|| ||| |||| ||| ||||||| || || || || || || | || |||||||| ||
Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601
Query 84503 AGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAG 84540
| ||||| || | ||| || | | ||| |||||||
Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAG 2591563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571273457181600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |