Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq6 104 3e-17 >seq2 Length=11374105 Score = 116 bits (128), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 84460 AGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAG 84519 ||||||| || || || || || || ||||| |||||||| ||| ||||| || | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 84520 GATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCC 84579 | || | | ||| ||||||| || ||||| || ||||| || || |||||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 84580 ATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA 84633 | ||||||||||| | ||| | |||||||| ||||||||||||| ||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGT-AGCAA 4329603 >seq6 Length=8045491 Score = 104 bits (114), Expect = 3e-17 Identities = 118/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 84383 ACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGC 84442 || |||||||||||| || || |||||||| || || |||||||||||| ||||| | Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATG---TGTTCTGT 2591661 Query 84443 CTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 || ||| |||| ||| ||||||| || || || || || || | || |||||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 84503 AGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAG 84540 | ||||| || | ||| || | | ||| ||||||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAG 2591563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273457181600