Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 4e-15 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||| | || | || | |||||||| ||||| ||| Sbjct 2578422 CCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCCA 2578363 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| |||| || ||||| |||||||| ||| | |||| |||||| || ||| Sbjct 2578362 TTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGAA 2578303 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | || || || | || ||||||||| Sbjct 2578302 ACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAATT 2578243 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 2578242 CCTTCAATGCTATCATCTTTCAT 2578220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108659472800