Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 120 2e-21 seq10 87.8 1e-11 >seq8 Length=7641483 Score = 120 bits (132), Expect = 2e-21 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGC 550401 ||||| | ||||||||| |||| ||| |||| | ||||| |||| ||| || | || Sbjct 7582022 GTTTTGACAAAAATGAAAGAAACTGCCGAGGCTTATCTTGGT-AAGAGTGTTTCGAAAGC 7582080 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 ||| | || || ||||| ||||| |||||| | ||| | || ||||| |||||||| || Sbjct 7582081 AGTGGTCACAGTTCCAGCTTATTTCAATGACGCGCAAAGACAGGCTACAAAAGATGCGGG 7582140 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 | ||| | || ||| |||| | ||||| || |||||||| ||||||||||| || | Sbjct 7582141 GAGAATTTCGGGGCTTGATGTGCAGCGTATCATTAATGAACCCACTGCTGCTGCTCTCTC 7582200 Query 550522 ATATGGACTT 550531 ||||| ||| Sbjct 7582201 TTATGGGCTT 7582210 Score = 100 bits (110), Expect = 2e-15 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||| | || || | |||||||| ||||| |||||||| || ||| | || || Sbjct 3875885 GTGACGAAGGCTGTTGTTACTGTACCTGCATACTTTAATGATTCCCAAAGGACTGCAACA 3875944 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTA-ATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||| ||||| |||||||| |||| ||||| | || || ||||||||||| ||||| Sbjct 3875945 AAAGATGCCGGACGGATTGCTGG-CTTAGATGTTTTGCGCATCATCAATGAACCCACTGC 3876003 Query 550510 TGCTGCACTTGCATATGGACTTGATAA 550536 ||| | | || |||||| |||| || Sbjct 3876004 AGCTTCGTTGGCTTATGGATTTGAAAA 3876030 >seq10 Length=6603776 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||| | || || | || || || ||||| || |||||||| ||| | || || Sbjct 503563 GTGACGAAGGCGGTGGTTACCGTGCCTGCATACTTCAATGACTCCCAAAGAACTGCAACA 503504 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| ||||| ||||| | ||||||| || || || || ||||| |||||| Sbjct 503503 AAAGATGCTGGCCGTATCGCTGGTTTGGATGTTCTCCGCATAATTAACGAACCAACTGCT 503444 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||| | || || |||||| | || || Sbjct 503443 GCTTCGCTGGCTTATGGATTCGAAAA 503418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294942309800