Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 1e-15 seq6 91.5 4e-14 >seq2 Length=11374105 Score = 96.9 bits (106), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 ||||||||||| || | | | || ||| | || ||||| |||||||||| |||| | Sbjct 4329620 AGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 4329679 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | || | || ||| || || ||||| | || ||| | || ||||| |||||| || Sbjct 4329680 CTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTG 4329739 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACT 26297 |||| |||||||| || || ||||||||||| |||| Sbjct 4329740 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 91.5 bits (100), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | || ||| | || ||||| |||||| |||||| || |||| || Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 || |||||||| || ||||| || | |||||| | ||||||| | | || |||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCAC 2591681 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGT 26374 |||||||| ||| || || ||||| || ||| || Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726365152480