Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 1e-15
seq6 91.5 4e-14
>seq2
Length=11374105
Score = 96.9 bits (106), Expect = 1e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201
||||||||||| || | | | || ||| | || ||||| |||||||||| |||| |
Sbjct 4329620 AGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 4329679
Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261
| || | || ||| || || ||||| | || ||| | || ||||| |||||| ||
Sbjct 4329680 CTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTG 4329739
Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACT 26297
|||| |||||||| || || ||||||||||| ||||
Sbjct 4329740 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 91.5 bits (100), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 3/156 (2%)
Strand=Plus/Plus
Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278
|| || ||||| | || ||| | || ||||| |||||| |||||| || |||| ||
Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624
Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338
|| |||||||| || ||||| || | |||||| | ||||||| | | || ||||||
Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCAC 2591681
Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGT 26374
|||||||| ||| || || ||||| || ||| ||
Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146726365152480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |