Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 4e-27
seq6 123 8e-24
seq11 93.3 1e-14
seq19 87.8 5e-13
seq3 82.4 2e-11
>seq2
Length=11374105
Score = 134 bits (148), Expect = 4e-27
Identities = 130/167 (78%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 36462 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 36521
|||||||| || ||||| || ||||||||||||||||| ||||| ||||| |||| ||||
Sbjct 4329773 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAGGG 4329714
Query 36522 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 36581
|||| ||||| |||||| || ||||| ||||| |||||||| || ||| |||||
Sbjct 4329713 TAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCCAA 4329654
Query 36582 GGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628
|| | |||||| | | |||| |||||||| | || |||| |||
Sbjct 4329653 GGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607
>seq6
Length=8045491
Score = 123 bits (136), Expect = 8e-24
Identities = 122/157 (78%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 36383 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 36442
|| |||||| || || || || | ||| ||||| || |||||||||| |||||||||
Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661
Query 36443 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 36502
|| || |||| || || ||||| || || ||||| || |||| || ||||||||| ||
Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601
Query 36503 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539
||| ||||| |||| |||||||| ||||| ||||||
Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCA 2591564
>seq11
Length=5849386
Score = 93.3 bits (102), Expect = 1e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524
|||| || ||||| || ||||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 4649045 AAAGCACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAGTAGGGTAG 4649104
Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584
| ||||| | |||| ||| || | ||| | |||||||| || ||| ||||| ||
Sbjct 4649105 ATCAAGAAAAAAGCAGTTGCAACTACTACATGAGCTGAATATGCAACAGCAATCCAAGGA 4649164
Query 36585 CTCATACCTAG 36595
| ||||| ||
Sbjct 4649165 CGAATACCCAG 4649175
>seq19
Length=3929835
Score = 87.8 bits (96), Expect = 5e-13
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032
|||| ||| || | ||||||||| || ||||| ||||||||||||||||| || | ||
Sbjct 3082548 GCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3082489
Query 36033 GCACGGTTAAGAATGTCAGCCCAAGT 36058
|||||||| | ||| |||||||||||
Sbjct 3082488 GCACGGTTGATAATATCAGCCCAAGT 3082463
>seq3
Length=8976907
Score = 82.4 bits (90), Expect = 2e-11
Identities = 136/195 (70%), Gaps = 11/195 (6%)
Strand=Plus/Minus
Query 36507 CCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAA 36566
||||| |||| | |||||| || || |||||| || ||||| ||||| ||||||||
Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884
Query 36567 GCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA-- 36624
|| ||| ||||| || |||||| || | ||||||||||||| | || |||
Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824
Query 36625 -AGTAAGCTGAGATACCAATGAGAAAGTG--GAA---CACAATGAGTTGATATGGTCCTC 36678
|| ||||| | ||||| | ||||| ||| ||||| || | || || || |
Sbjct 715823 TAGCAAGCT---ACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGC 715767
Query 36679 CGTTATATAACCACT 36693
| || ||||||||||
Sbjct 715766 CATTGTATAACCACT 715752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150454364267080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |