Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq2 134 4e-27 seq6 123 8e-24 seq11 93.3 1e-14 seq19 87.8 5e-13 seq3 82.4 2e-11 >seq2 Length=11374105 Score = 134 bits (148), Expect = 4e-27 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 36462 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 36521 |||||||| || ||||| || ||||||||||||||||| ||||| ||||| |||| |||| Sbjct 4329773 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAGGG 4329714 Query 36522 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 36581 |||| ||||| |||||| || ||||| ||||| |||||||| || ||| ||||| Sbjct 4329713 TAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCCAA 4329654 Query 36582 GGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 || | |||||| | | |||| |||||||| | || |||| ||| Sbjct 4329653 GGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq6 Length=8045491 Score = 123 bits (136), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 36383 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 36442 || |||||| || || || || | ||| ||||| || |||||||||| ||||||||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661 Query 36443 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 36502 || || |||| || || ||||| || || ||||| || |||| || ||||||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 36503 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 ||| ||||| |||| |||||||| ||||| |||||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCA 2591564 >seq11 Length=5849386 Score = 93.3 bits (102), Expect = 1e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524 |||| || ||||| || ||||||||||||||||| ||||| ||||| ||| ||||||| Sbjct 4649045 AAAGCACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAGTAGGGTAG 4649104 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584 | ||||| | |||| ||| || | ||| | |||||||| || ||| ||||| || Sbjct 4649105 ATCAAGAAAAAAGCAGTTGCAACTACTACATGAGCTGAATATGCAACAGCAATCCAAGGA 4649164 Query 36585 CTCATACCTAG 36595 | ||||| || Sbjct 4649165 CGAATACCCAG 4649175 >seq19 Length=3929835 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| || | ||||||||| || ||||| ||||||||||||||||| || | || Sbjct 3082548 GCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3082489 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGT 36058 |||||||| | ||| ||||||||||| Sbjct 3082488 GCACGGTTGATAATATCAGCCCAAGT 3082463 >seq3 Length=8976907 Score = 82.4 bits (90), Expect = 2e-11 Identities = 136/195 (70%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 36507 CCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAA 36566 ||||| |||| | |||||| || || |||||| || ||||| ||||| |||||||| Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884 Query 36567 GCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA-- 36624 || ||| ||||| || |||||| || | ||||||||||||| | || ||| Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824 Query 36625 -AGTAAGCTGAGATACCAATGAGAAAGTG--GAA---CACAATGAGTTGATATGGTCCTC 36678 || ||||| | ||||| | ||||| ||| ||||| || | || || || | Sbjct 715823 TAGCAAGCT---ACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGC 715767 Query 36679 CGTTATATAACCACT 36693 | || |||||||||| Sbjct 715766 CATTGTATAACCACT 715752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454364267080