Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2 114 4e-21 seq6 113 1e-20 seq19 95.1 4e-15 seq8 86.0 2e-12 >seq2 Length=11374105 Score = 114 bits (126), Expect = 4e-21 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 5682 AGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAG 5741 |||| ||||||||||| || || ||||||||||||||| |||||||| || || | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 5742 GGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATC 5800 |||| | || || || | ||||| | || || || || ||||||||||| || |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAG-CAGCTGCTACAGGAGCTGAATATGCAACAGCAATC 4329657 Query 5801 CATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 || || ||||| || || | | |||| |||||||| | || |||| ||| Sbjct 4329656 CAAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq6 Length=8045491 Score = 113 bits (124), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 || |||||| ||||| || || | ||||||||| || |||||||||| ||||||||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 || |||||| | || ||||| || |||||||| || || |||| || ||||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 5725 ACTTCCCTGTCCGAAAGGGTA 5745 |||||| || || | |||||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTA 2591580 >seq19 Length=3929835 Score = 95.1 bits (104), Expect = 4e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || || | ||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 3082548 GCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3082489 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTG 5281 |||||||| | | ||| ||||||||| Sbjct 3082488 GCACGGTTGATAATATCAGCCCAAGTG 3082462 >seq8 Length=7641483 Score = 86.0 bits (94), Expect = 2e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| | || |||| || || |||||||||| |||||| ||||| ||||| ||||||||| Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 ||||| || ||| |||| | || ||| | |||| | || | | || | |||| Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCA 525141 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGT 5352 || | || || || || | || |||| || || ||||||||||| Sbjct 525140 ACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGT 525094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649563745720